RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 RFX1P22670 979 aa8.63□□□□□ -1.03
CD44-215ENST00000525241 SRPK2P78362 688 aaKnown RBP8.63□□□□□ -1.03
CD44-215ENST00000525241 CTC1Q2NKJ3 1217 aa8.63□□□□□ -1.03
CD44-215ENST00000525241 KANK4Q5T7N3 995 aaPredicted RBP8.63□□□□□ -1.03
CD44-215ENST00000525241 KDF1Q8NAX2 398 aaPredicted RBP8.63□□□□□ -1.03
CD44-215ENST00000525241 SIRT1Q96EB6 747 aa8.63□□□□□ -1.03
CD44-215ENST00000525241 ARID3AQ99856 593 aa8.63□□□□□ -1.03
CD44-215ENST00000525241 MYCP01106 439 aaPredicted RBP8.62□□□□□ -1.03
CD44-215ENST00000525241 MEIOBQ8N635 442 aa8.62□□□□□ -1.03
CD44-215ENST00000525241 MKRN1Q9UHC7 482 aaKnown RBP8.62□□□□□ -1.03
CD44-215ENST00000525241 NOD1Q9Y239 953 aa8.62□□□□□ -1.03
CD44-215ENST00000525241 AXIN1O15169 862 aa8.61□□□□□ -1.03
CD44-215ENST00000525241 ADH1AP07327 375 aa8.61□□□□□ -1.03
CD44-215ENST00000525241 PCDHGA11Q9Y5H2 935 aa8.61□□□□□ -1.03
CD44-215ENST00000525241 ST8SIA5O15466 376 aa8.6□□□□□ -1.03
CD44-215ENST00000525241 AGBL1Q96MI9 1066 aa8.6□□□□□ -1.03
CD44-215ENST00000525241 ESF1Q9H501 851 aaKnown RBP8.6□□□□□ -1.03
CD44-215ENST00000525241 AAASQ9NRG9 546 aa8.6□□□□□ -1.03
CD44-215ENST00000525241 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.59□□□□□ -1.03
CD44-215ENST00000525241 ATP5J2-PTCD1G3V325 749 aa8.59□□□□□ -1.03
CD44-215ENST00000525241 LCE2BO14633 110 aa8.59□□□□□ -1.03
CD44-215ENST00000525241 GTF2IP78347 998 aa8.59□□□□□ -1.03
CD44-215ENST00000525241 CLDN10P78369 228 aa8.59□□□□□ -1.03
CD44-215ENST00000525241 VRTNQ9H8Y1 702 aa8.59□□□□□ -1.03
CD44-215ENST00000525241 ZBTB7BO15156 539 aaPredicted RBP8.58□□□□□ -1.04
CD44-215ENST00000525241 PTGIRP43119 386 aa8.58□□□□□ -1.04
CD44-215ENST00000525241 CDCA8Q53HL2 280 aa8.58□□□□□ -1.04
CD44-215ENST00000525241 Q6ZNB5 142 aa8.58□□□□□ -1.04
CD44-215ENST00000525241 CYP2U1Q7Z449 544 aa8.58□□□□□ -1.04
CD44-215ENST00000525241 TRIM50Q86XT4 487 aa8.58□□□□□ -1.04
CD44-215ENST00000525241 PBXIP1Q96AQ6 731 aa8.58□□□□□ -1.04
CD44-215ENST00000525241 DACH1Q9UI36 760 aa8.58□□□□□ -1.04
CD44-215ENST00000525241 TRIM46Q7Z4K8 759 aa8.57□□□□□ -1.04
CD44-215ENST00000525241 OGFOD1Q8N543 542 aa8.57□□□□□ -1.04
CD44-215ENST00000525241 GNRH1P01148 92 aa8.56□□□□□ -1.04
CD44-215ENST00000525241 BMP1P13497 986 aa8.56□□□□□ -1.04
CD44-215ENST00000525241 RASA1P20936 1047 aa8.56□□□□□ -1.04
CD44-215ENST00000525241 ATP1A2P50993 1020 aa8.56□□□□□ -1.04
CD44-215ENST00000525241 RELBQ01201 579 aa8.56□□□□□ -1.04
CD44-215ENST00000525241 CRTC2Q53ET0 693 aaPredicted RBP8.56□□□□□ -1.04
CD44-215ENST00000525241 MRPL14Q6P1L8 145 aaKnown RBP8.56□□□□□ -1.04
CD44-215ENST00000525241 LINC00528Q8N1L1 170 aa8.56□□□□□ -1.04
CD44-215ENST00000525241 TSEN34Q9BSV6 310 aaKnown RBP8.56□□□□□ -1.04
CD44-215ENST00000525241 DNAAF2Q9NVR5 837 aaKnown RBP8.56□□□□□ -1.04
CD44-215ENST00000525241 KIAA1024Q9UPX6 916 aa8.56□□□□□ -1.04
CD44-215ENST00000525241 FAM196BA6NMK8 535 aa8.55□□□□□ -1.04
CD44-215ENST00000525241 DKK1O94907 266 aa8.55□□□□□ -1.04
CD44-215ENST00000525241 STAU1O95793 577 aaKnown RBP8.55□□□□□ -1.04
CD44-215ENST00000525241 SCNN1DP51172 638 aa8.55□□□□□ -1.04
CD44-215ENST00000525241 PTK7Q13308 1070 aa8.55□□□□□ -1.04
CD44-215ENST00000525241 LARGE2Q8N3Y3 721 aa8.55□□□□□ -1.04
CD44-215ENST00000525241 ZNF395Q9H8N7 513 aaPredicted RBP8.55□□□□□ -1.04
CD44-215ENST00000525241 A0A1W2PRU2 124 aa8.54□□□□□ -1.04
CD44-215ENST00000525241 SPINT1O43278 529 aa8.54□□□□□ -1.04
CD44-215ENST00000525241 PPP1R15AO75807 674 aaPredicted RBP8.54□□□□□ -1.04
CD44-215ENST00000525241 LARP1Q6PKG0 1096 aaKnown RBP8.54□□□□□ -1.04
CD44-215ENST00000525241 ETNK1Q9HBU6 452 aa8.54□□□□□ -1.04
CD44-215ENST00000525241 ARHGEF10LQ9HCE6 1279 aa8.54□□□□□ -1.04
CD44-215ENST00000525241 ATP13A2Q9NQ11 1180 aa8.54□□□□□ -1.04
CD44-215ENST00000525241 TMEM229AB2RXF0 380 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 USP17L15C9J2P7 530 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 USP17L10C9JJH3 530 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 USP17L13C9JLJ4 530 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 USP17L12C9JPN9 530 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 USP17L11C9JVI0 530 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 USP17L21D6R901 530 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 USP17L18D6R9N7 530 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 USP17L22D6RA61 530 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 USP17L17D6RBQ6 530 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 USP17L19D6RCP7 530 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 USP17L20D6RJB6 530 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 UPP2O95045 317 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 ATG7O95352 703 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 PSME1Q06323 249 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 USP17L24Q0WX57 530 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 CCDC102BQ68D86 513 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 SIX5Q8N196 739 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 ZNF594Q96JF6 807 aaPredicted RBP8.53□□□□□ -1.04
CD44-215ENST00000525241 RAB6BQ9NRW1 208 aa8.53□□□□□ -1.04
CD44-215ENST00000525241 WASLO00401 505 aaPredicted RBP8.52□□□□□ -1.05
CD44-215ENST00000525241 IL2RAP01589 272 aa8.52□□□□□ -1.05
CD44-215ENST00000525241 BMP2P12643 396 aa8.52□□□□□ -1.05
CD44-215ENST00000525241 GDF10P55107 478 aa8.52□□□□□ -1.05
CD44-215ENST00000525241 CLN3Q13286 438 aa8.52□□□□□ -1.05
CD44-215ENST00000525241 SCARF1Q14162 830 aa8.52□□□□□ -1.05
CD44-215ENST00000525241 C6orf118Q5T5N4 469 aa8.52□□□□□ -1.05
CD44-215ENST00000525241 TPCN2Q8NHX9 752 aa8.52□□□□□ -1.05
CD44-215ENST00000525241 XAGE2Q96GT9 111 aa8.52□□□□□ -1.05
CD44-215ENST00000525241 ZFP42Q96MM3 310 aa8.52□□□□□ -1.05
CD44-215ENST00000525241 PURBQ96QR8 312 aaKnown RBP8.52□□□□□ -1.05
CD44-215ENST00000525241 HRH3Q9Y5N1 445 aa8.52□□□□□ -1.05
CD44-215ENST00000525241 INHAP05111 366 aa8.51□□□□□ -1.05
CD44-215ENST00000525241 CNKSR1Q969H4 720 aa8.51□□□□□ -1.05
CD44-215ENST00000525241 ARXQ96QS3 562 aa8.51□□□□□ -1.05
CD44-215ENST00000525241 INSM2Q96T92 566 aaPredicted RBP8.51□□□□□ -1.05
CD44-215ENST00000525241 ESYT1Q9BSJ8 1104 aa8.51□□□□□ -1.05
CD44-215ENST00000525241 MEN1O00255 615 aa8.5□□□□□ -1.05
CD44-215ENST00000525241 CTSOP43234 321 aaPredicted RBP8.5□□□□□ -1.05
CD44-215ENST00000525241 DPYDQ12882 1025 aa8.5□□□□□ -1.05
CD44-215ENST00000525241 ELOAQ14241 798 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms