RNA–Protein interactions for RNA: ENST00000523966.5

SKP1-212, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 3

Gene SKP1, Length 899 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-212ENST00000523966 PATL2C9JE40 543 aaKnown RBP7.06□□□□□ -1.28
SKP1-212ENST00000523966 SIAH2O43255 324 aa7.06□□□□□ -1.28
SKP1-212ENST00000523966 ALDH1A1P00352 501 aa7.06□□□□□ -1.28
SKP1-212ENST00000523966 B4GALNT3Q6L9W6 998 aa7.06□□□□□ -1.28
SKP1-212ENST00000523966 ZNF594Q96JF6 807 aaPredicted RBP7.06□□□□□ -1.28
SKP1-212ENST00000523966 MYT1Q01538 1121 aa7.05□□□□□ -1.28
SKP1-212ENST00000523966 PTK7Q13308 1070 aa7.05□□□□□ -1.28
SKP1-212ENST00000523966 CRTC2Q53ET0 693 aaPredicted RBP7.05□□□□□ -1.28
SKP1-212ENST00000523966 CC2D2BQ6DHV5 1058 aa7.05□□□□□ -1.28
SKP1-212ENST00000523966 ANKMY2Q8IV38 441 aa7.05□□□□□ -1.28
SKP1-212ENST00000523966 CYP4X1Q8N118 509 aa7.05□□□□□ -1.28
SKP1-212ENST00000523966 SNIP1Q8TAD8 396 aaKnown RBP7.05□□□□□ -1.28
SKP1-212ENST00000523966 EMID1Q96A84 441 aaPredicted RBP7.05□□□□□ -1.28
SKP1-212ENST00000523966 GRM5P41594 1212 aa7.04□□□□□ -1.28
SKP1-212ENST00000523966 DPYDQ12882 1025 aa7.04□□□□□ -1.28
SKP1-212ENST00000523966 EMILIN1Q9Y6C2 1016 aa7.04□□□□□ -1.28
SKP1-212ENST00000523966 SEC13P55735 322 aa7.03□□□□□ -1.28
SKP1-212ENST00000523966 PPP1R26Q5T8A7 1209 aaPredicted RBP7.03□□□□□ -1.28
SKP1-212ENST00000523966 CCDC102BQ68D86 513 aa7.03□□□□□ -1.28
SKP1-212ENST00000523966 TPCN2Q8NHX9 752 aa7.03□□□□□ -1.28
SKP1-212ENST00000523966 CYLDQ9NQC7 956 aa7.03□□□□□ -1.28
SKP1-212ENST00000523966 TMPRSS4Q9NRS4 437 aa7.03□□□□□ -1.28
SKP1-212ENST00000523966 BRD1O95696 1058 aa7.02□□□□□ -1.29
SKP1-212ENST00000523966 ERVK-9P63128 1117 aa7.02□□□□□ -1.29
SKP1-212ENST00000523966 CLDN10P78369 228 aa7.02□□□□□ -1.29
SKP1-212ENST00000523966 NNTQ13423 1086 aa7.02□□□□□ -1.29
SKP1-212ENST00000523966 TMEM164Q5U3C3 297 aa7.02□□□□□ -1.29
SKP1-212ENST00000523966 CYP2U1Q7Z449 544 aa7.02□□□□□ -1.29
SKP1-212ENST00000523966 HINFPQ9BQA5 517 aa7.02□□□□□ -1.29
SKP1-212ENST00000523966 SIX5Q8N196 739 aa7.01□□□□□ -1.29
SKP1-212ENST00000523966 ZNF784Q8NCA9 323 aaPredicted RBP7.01□□□□□ -1.29
SKP1-212ENST00000523966 STK32AQ8WU08 396 aa7.01□□□□□ -1.29
SKP1-212ENST00000523966 PCDHGA11Q9Y5H2 935 aa7.01□□□□□ -1.29
SKP1-212ENST00000523966 TNFRSF10AO00220 468 aa7□□□□□ -1.29
SKP1-212ENST00000523966 BACH1O14867 736 aa7□□□□□ -1.29
SKP1-212ENST00000523966 ZBTB7BO15156 539 aaPredicted RBP7□□□□□ -1.29
SKP1-212ENST00000523966 SCTRP47872 440 aa7□□□□□ -1.29
SKP1-212ENST00000523966 TRIM26Q12899 539 aaPredicted RBP7□□□□□ -1.29
SKP1-212ENST00000523966 ESCO1Q5FWF5 840 aa7□□□□□ -1.29
SKP1-212ENST00000523966 PKD2L1Q9P0L9 805 aa7□□□□□ -1.29
SKP1-212ENST00000523966 ZMIZ1Q9ULJ6 1067 aa7□□□□□ -1.29
SKP1-212ENST00000523966 TMEM88BA6NKF7 163 aa6.99□□□□□ -1.29
SKP1-212ENST00000523966 SWI5Q1ZZU3 235 aa6.99□□□□□ -1.29
SKP1-212ENST00000523966 CARNS1A5YM72 827 aa6.98□□□□□ -1.29
SKP1-212ENST00000523966 SFI1A8K8P3 1242 aa6.98□□□□□ -1.29
SKP1-212ENST00000523966 GNRH1P01148 92 aa6.98□□□□□ -1.29
SKP1-212ENST00000523966 NR3C2P08235 984 aa6.98□□□□□ -1.29
SKP1-212ENST00000523966 KCNA1Q09470 495 aa6.98□□□□□ -1.29
SKP1-212ENST00000523966 OSBPL3Q9H4L5 887 aa6.98□□□□□ -1.29
SKP1-212ENST00000523966 KIAA1024Q9UPX6 916 aa6.98□□□□□ -1.29
SKP1-212ENST00000523966 GDF9O60383 454 aa6.97□□□□□ -1.29
SKP1-212ENST00000523966 RGS20O76081 388 aa6.97□□□□□ -1.29
SKP1-212ENST00000523966 GDF10P55107 478 aa6.97□□□□□ -1.29
SKP1-212ENST00000523966 WDR4P57081 412 aaKnown RBP6.97□□□□□ -1.29
SKP1-212ENST00000523966 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.97□□□□□ -1.293e-6■■■■■ 28.6
SKP1-212ENST00000523966 CLP1Q92989 425 aaKnown RBP6.97□□□□□ -1.29
SKP1-212ENST00000523966 PODXL2Q9NZ53 605 aa6.97□□□□□ -1.29
SKP1-212ENST00000523966 MTMR7Q9Y216 660 aa6.97□□□□□ -1.29
SKP1-212ENST00000523966 J3QL48 77 aa6.96□□□□□ -1.3
SKP1-212ENST00000523966 M0R2N6 131 aa6.96□□□□□ -1.3
SKP1-212ENST00000523966 LILRA1O75019 489 aa6.96□□□□□ -1.3
SKP1-212ENST00000523966 ZIC2O95409 532 aaPredicted RBP6.96□□□□□ -1.3
SKP1-212ENST00000523966 ADH1AP07327 375 aa6.95□□□□□ -1.3
SKP1-212ENST00000523966 ATP2B4P23634 1241 aa6.95□□□□□ -1.3
SKP1-212ENST00000523966 PRR20EP86478 221 aa6.95□□□□□ -1.3
SKP1-212ENST00000523966 PRR20CP86479 221 aa6.95□□□□□ -1.3
SKP1-212ENST00000523966 PRR20DP86480 221 aa6.95□□□□□ -1.3
SKP1-212ENST00000523966 PRR20BP86481 221 aa6.95□□□□□ -1.3
SKP1-212ENST00000523966 PRR20AP86496 221 aa6.95□□□□□ -1.3
SKP1-212ENST00000523966 CCER1Q8TC90 406 aaPredicted RBP6.95□□□□□ -1.3
SKP1-212ENST00000523966 NLRP3Q96P20 1036 aa6.95□□□□□ -1.3
SKP1-212ENST00000523966 ZNF358Q9NW07 568 aa6.95□□□□□ -1.3
SKP1-212ENST00000523966 SERTAD1Q9UHV2 236 aa6.95□□□□□ -1.3
SKP1-212ENST00000523966 PRMT3O60678 531 aa6.94□□□□□ -1.3
SKP1-212ENST00000523966 UPP2O95045 317 aa6.94□□□□□ -1.3
SKP1-212ENST00000523966 INHAP05111 366 aa6.94□□□□□ -1.3
SKP1-212ENST00000523966 GTF2E1P29083 439 aaPredicted RBP6.94□□□□□ -1.3
SKP1-212ENST00000523966 ARID4AP29374 1257 aaPredicted RBP6.94□□□□□ -1.3
SKP1-212ENST00000523966 ADD1P35611 737 aaKnown RBP6.94□□□□□ -1.3
SKP1-212ENST00000523966 ITPKCQ96DU7 683 aa6.94□□□□□ -1.3
SKP1-212ENST00000523966 TOR4AQ9NXH8 423 aa6.94□□□□□ -1.3
SKP1-212ENST00000523966 PDZRN3Q9UPQ7 1066 aa6.94□□□□□ -1.3
SKP1-212ENST00000523966 DKK1O94907 266 aa6.93□□□□□ -1.3
SKP1-212ENST00000523966 CBLBQ13191 982 aa6.93□□□□□ -1.3
SKP1-212ENST00000523966 TSEN2Q8NCE0 465 aaKnown RBP6.93□□□□□ -1.3
SKP1-212ENST00000523966 VTI1AQ96AJ9 217 aa6.93□□□□□ -1.3
SKP1-212ENST00000523966 PRIMPOLQ96LW4 560 aa6.93□□□□□ -1.3
SKP1-212ENST00000523966 ARHGEF10LQ9HCE6 1279 aa6.93□□□□□ -1.3
SKP1-212ENST00000523966 CHMP3Q9Y3E7 222 aa6.93□□□□□ -1.3
SKP1-212ENST00000523966 TMEM229AB2RXF0 380 aa6.92□□□□□ -1.3
SKP1-212ENST00000523966 MEN1O00255 615 aa6.92□□□□□ -1.3
SKP1-212ENST00000523966 WASLO00401 505 aaPredicted RBP6.92□□□□□ -1.3
SKP1-212ENST00000523966 SMPD1P17405 629 aa6.92□□□□□ -1.3
SKP1-212ENST00000523966 SSFA2P28290 1259 aa6.92□□□□□ -1.3
SKP1-212ENST00000523966 FAM69CQ0P6D2 419 aa6.92□□□□□ -1.3
SKP1-212ENST00000523966 GZF1Q9H116 711 aaPredicted RBP6.92□□□□□ -1.3
SKP1-212ENST00000523966 ETNK1Q9HBU6 452 aa6.92□□□□□ -1.3
SKP1-212ENST00000523966 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.92□□□□□ -1.34e-6■■■■■ 33.3
SKP1-212ENST00000523966 RAB6BQ9NRW1 208 aa6.92□□□□□ -1.3
SKP1-212ENST00000523966 TIMP2P16035 220 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms