RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 PARP4Q9UKK3 1724 aaKnown RBP21.57■■□□□ 1.04
LSM1-204ENST00000522515 OVOS2A0A0G2JMS6 1433 aa21.56■■□□□ 1.04
LSM1-204ENST00000522515 POTEAQ6S8J7 498 aa21.56■■□□□ 1.04
LSM1-204ENST00000522515 MAPK8IP3Q9UPT6 1336 aa21.55■■□□□ 1.04
LSM1-204ENST00000522515 CDCA7Q9BWT1 371 aaPredicted RBP21.54■■□□□ 1.04
LSM1-204ENST00000522515 SENP3-EIF4A1A0A087X0R7 540 aa21.53■■□□□ 1.04
LSM1-204ENST00000522515 NEFMP07197 916 aa21.53■■□□□ 1.04
LSM1-204ENST00000522515 RBM6P78332 1123 aaKnown RBP21.53■■□□□ 1.04
LSM1-204ENST00000522515 MTHFSDQ2M296 383 aaKnown RBP21.53■■□□□ 1.04
LSM1-204ENST00000522515 PLEKHG2Q9H7P9 1386 aa21.53■■□□□ 1.04
LSM1-204ENST00000522515 APAF1O14727 1248 aa21.53■■□□□ 1.04
LSM1-204ENST00000522515 ONECUT3O60422 494 aaPredicted RBP21.53■■□□□ 1.04
LSM1-204ENST00000522515 PLEKHO1Q53GL0 409 aaPredicted RBP21.53■■□□□ 1.04
LSM1-204ENST00000522515 PKD1L3Q7Z443 1732 aa21.52■■□□□ 1.04
LSM1-204ENST00000522515 THSD7AQ9UPZ6 1657 aa21.52■■□□□ 1.04
LSM1-204ENST00000522515 AMOTQ4VCS5 1084 aa21.52■■□□□ 1.04
LSM1-204ENST00000522515 ZCRB1Q8TBF4 217 aaKnown RBP21.52■■□□□ 1.04
LSM1-204ENST00000522515 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.52■■□□□ 1.04
LSM1-204ENST00000522515 SPG7Q9UQ90 795 aa21.51■■□□□ 1.03
LSM1-204ENST00000522515 LRRC37A3O60309 1634 aa21.51■■□□□ 1.03
LSM1-204ENST00000522515 A0A0G2JS52 829 aa21.5■■□□□ 1.03
LSM1-204ENST00000522515 RXRBP28702 533 aa21.5■■□□□ 1.03
LSM1-204ENST00000522515 MYT1Q01538 1121 aa21.5■■□□□ 1.03
LSM1-204ENST00000522515 SHANK3Q9BYB0 1731 aa21.5■■□□□ 1.03
LSM1-204ENST00000522515 EXOC5O00471 708 aa21.49■■□□□ 1.03
LSM1-204ENST00000522515 DDB1Q16531 1140 aa21.49■■□□□ 1.03
LSM1-204ENST00000522515 RRP7AQ9Y3A4 280 aaKnown RBP21.49■■□□□ 1.03
LSM1-204ENST00000522515 TMPOP42166 694 aaKnown RBP21.48■■□□□ 1.03
LSM1-204ENST00000522515 NFE2L2Q16236 605 aa21.48■■□□□ 1.03
LSM1-204ENST00000522515 ZNF530Q6P9A1 599 aaPredicted RBP21.48■■□□□ 1.03
LSM1-204ENST00000522515 SEPT12Q8IYM1 358 aa21.48■■□□□ 1.03
LSM1-204ENST00000522515 GAS2L2Q8NHY3 880 aa21.48■■□□□ 1.03
LSM1-204ENST00000522515 TNS2Q63HR2 1409 aa21.48■■□□□ 1.03
LSM1-204ENST00000522515 NEUROD2Q15784 382 aa21.48■■□□□ 1.03
LSM1-204ENST00000522515 CYP27B1O15528 508 aa21.47■■□□□ 1.03
LSM1-204ENST00000522515 DDX54Q8TDD1 881 aaKnown RBP21.47■■□□□ 1.03
LSM1-204ENST00000522515 PCDH11XQ9BZA7 1347 aa21.46■■□□□ 1.03
LSM1-204ENST00000522515 PCDH11YQ9BZA8 1340 aa21.46■■□□□ 1.03
LSM1-204ENST00000522515 DLG5Q8TDM6 1919 aa21.45■■□□□ 1.02
LSM1-204ENST00000522515 RIPK4P57078 832 aa21.45■■□□□ 1.02
LSM1-204ENST00000522515 PHKG2P15735 406 aa21.44■■□□□ 1.02
LSM1-204ENST00000522515 IFNL2Q8IZJ0 200 aa21.44■■□□□ 1.02
LSM1-204ENST00000522515 SALL2Q9Y467 1007 aaPredicted RBP21.44■■□□□ 1.02
LSM1-204ENST00000522515 AKAP4Q5JQC9 854 aa21.44■■□□□ 1.02
LSM1-204ENST00000522515 C1orf141Q5JVX7 400 aa21.44■■□□□ 1.02
LSM1-204ENST00000522515 MAP3K5Q99683 1374 aa21.42■■□□□ 1.02
LSM1-204ENST00000522515 GNAT3A8MTJ3 354 aa21.42■■□□□ 1.02
LSM1-204ENST00000522515 HNRNPUQ00839 825 aaKnown RBP eCLIP21.42■■□□□ 1.02
LSM1-204ENST00000522515 MARCH10Q8NA82 808 aaPredicted RBP21.42■■□□□ 1.02
LSM1-204ENST00000522515 RGS12O14924 1447 aa21.42■■□□□ 1.02
LSM1-204ENST00000522515 PDE3BQ13370 1112 aa21.41■■□□□ 1.02
LSM1-204ENST00000522515 TRIM35Q9UPQ4 493 aa21.41■■□□□ 1.02
LSM1-204ENST00000522515 BRWD3Q6RI45 1802 aa21.41■■□□□ 1.02
LSM1-204ENST00000522515 MPRIPQ6WCQ1 1025 aa21.4■■□□□ 1.02
LSM1-204ENST00000522515 DCTN1Q14203 1278 aa21.4■■□□□ 1.02
LSM1-204ENST00000522515 NKX1-1Q15270 411 aaPredicted RBP21.39■■□□□ 1.01
LSM1-204ENST00000522515 YTHDC1Q96MU7 727 aaKnown RBP21.39■■□□□ 1.01
LSM1-204ENST00000522515 HTATSF1O43719 755 aaKnown RBP21.38■■□□□ 1.01
LSM1-204ENST00000522515 NCBP3Q53F19 620 aaKnown RBP21.38■■□□□ 1.01
LSM1-204ENST00000522515 MCM10Q7L590 875 aa21.38■■□□□ 1.01
LSM1-204ENST00000522515 IL17REQ8NFR9 667 aa21.38■■□□□ 1.01
LSM1-204ENST00000522515 RTF1Q92541 710 aaKnown RBP21.38■■□□□ 1.01
LSM1-204ENST00000522515 LGR6Q9HBX8 967 aa21.38■■□□□ 1.01
LSM1-204ENST00000522515 KDM6AO15550 1401 aaPredicted RBP21.37■■□□□ 1.01
LSM1-204ENST00000522515 HSP90AB1P08238 724 aaKnown RBP21.37■■□□□ 1.01
LSM1-204ENST00000522515 CCDC27Q2M243 656 aa21.37■■□□□ 1.01
LSM1-204ENST00000522515 LMOD3Q0VAK6 560 aa21.36■■□□□ 1.01
LSM1-204ENST00000522515 FAM182BQ5T319 152 aa21.36■■□□□ 1.01
LSM1-204ENST00000522515 KRT27Q7Z3Y8 459 aa21.36■■□□□ 1.01
LSM1-204ENST00000522515 WWC1Q8IX03 1113 aa21.36■■□□□ 1.01
LSM1-204ENST00000522515 NGEFQ8N5V2 710 aa21.36■■□□□ 1.01
LSM1-204ENST00000522515 DCAF5Q96JK2 942 aa21.36■■□□□ 1.01
LSM1-204ENST00000522515 THUMPD2Q9BTF0 503 aaKnown RBP21.36■■□□□ 1.01
LSM1-204ENST00000522515 ADAMTS7Q9UKP4 1686 aa21.36■■□□□ 1.01
LSM1-204ENST00000522515 VIRMAQ69YN4 1812 aaKnown RBP21.36■■□□□ 1.01
LSM1-204ENST00000522515 RNMTO43148 476 aaKnown RBP21.36■■□□□ 1.01
LSM1-204ENST00000522515 SCN11AQ9UI33 1791 aa21.35■■□□□ 1.01
LSM1-204ENST00000522515 CEMIPQ8WUJ3 1361 aa21.34■■□□□ 1.01
LSM1-204ENST00000522515 TOGARAM1Q9Y4F4 1720 aa21.34■■□□□ 1.01
LSM1-204ENST00000522515 ZNF521Q96K83 1311 aa21.33■■□□□ 1
LSM1-204ENST00000522515 DOT1LQ8TEK3 1739 aa21.31■■□□□ 1
LSM1-204ENST00000522515 ZBED9Q6R2W3 1325 aa21.3■■□□□ 1
LSM1-204ENST00000522515 ERVV-2B6SEH9 535 aa21.29■■□□□ 1
LSM1-204ENST00000522515 TEFQ10587 303 aa21.29■■□□□ 1
LSM1-204ENST00000522515 ACSBG1Q96GR2 724 aa21.29■■□□□ 1
LSM1-204ENST00000522515 BCL9O00512 1426 aa21.29■■□□□ 1
LSM1-204ENST00000522515 CABP4P57796 275 aa21.28■■□□□ 1
LSM1-204ENST00000522515 WDR63Q8IWG1 891 aa21.28■■□□□ 1
LSM1-204ENST00000522515 NFATC2IPQ8NCF5 419 aa21.28■■□□□ 1
LSM1-204ENST00000522515 SLC52A2Q9HAB3 445 aa21.28■■□□□ 1
LSM1-204ENST00000522515 MRC1P22897 1456 aa21.28■■□□□ 1
LSM1-204ENST00000522515 PRIM1P49642 420 aaKnown RBP21.27■■□□□ 1
LSM1-204ENST00000522515 FAM196AQ6ZSG2 479 aa21.27■□□□□ 0.99
LSM1-204ENST00000522515 SIPA1L3O60292 1781 aaPredicted RBP21.27■□□□□ 0.99
LSM1-204ENST00000522515 ITGB4P16144 1822 aa21.27■□□□□ 0.99
LSM1-204ENST00000522515 KCNQ2O43526 872 aa21.26■□□□□ 0.99
LSM1-204ENST00000522515 CALD1Q05682 793 aaKnown RBP21.26■□□□□ 0.99
LSM1-204ENST00000522515 SYTL4Q96C24 671 aaPredicted RBP21.26■□□□□ 0.99
LSM1-204ENST00000522515 TAF7Q15545 349 aaPredicted RBP21.25■□□□□ 0.99
LSM1-204ENST00000522515 SPINK5Q9NQ38 1064 aaPredicted RBP21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms