RNA–Protein interactions for RNA: ENST00000512275.5

RFC1-213, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 841 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-213ENST00000512275 ZMIZ1Q9ULJ6 1067 aa11.12□□□□□ -0.63
RFC1-213ENST00000512275 CHD1O14646 1710 aa11.12□□□□□ -0.63
RFC1-213ENST00000512275 TNFRSF10AO00220 468 aa11.11□□□□□ -0.63
RFC1-213ENST00000512275 GDF9O60383 454 aa11.11□□□□□ -0.63
RFC1-213ENST00000512275 ADAM32Q8TC27 787 aa11.11□□□□□ -0.63
RFC1-213ENST00000512275 MAGI1Q96QZ7 1491 aaPredicted RBP11.11□□□□□ -0.63
RFC1-213ENST00000512275 FHAD1B1AJZ9 1412 aa11.1□□□□□ -0.63
RFC1-213ENST00000512275 PKDCCQ504Y2 493 aa11.1□□□□□ -0.63
RFC1-213ENST00000512275 GZF1Q9H116 711 aaPredicted RBP11.1□□□□□ -0.63
RFC1-213ENST00000512275 FCF1Q9Y324 198 aaKnown RBP11.1□□□□□ -0.63
RFC1-213ENST00000512275 PCDHB9Q9Y5E1 797 aa11.1□□□□□ -0.63
RFC1-213ENST00000512275 SH3RF1Q7Z6J0 888 aa11.09□□□□□ -0.63
RFC1-213ENST00000512275 ARHGAP9Q9BRR9 750 aa11.09□□□□□ -0.63
RFC1-213ENST00000512275 FAM196BA6NMK8 535 aa11.08□□□□□ -0.64
RFC1-213ENST00000512275 DGAT1O75907 488 aa11.08□□□□□ -0.64
RFC1-213ENST00000512275 SLFNL1Q499Z3 407 aa11.08□□□□□ -0.64
RFC1-213ENST00000512275 RNF135Q8IUD6 432 aa11.08□□□□□ -0.64
RFC1-213ENST00000512275 DEPDC4Q8N2C3 294 aa11.08□□□□□ -0.64
RFC1-213ENST00000512275 TNIKQ9UKE5 1360 aa11.07□□□□□ -0.64
RFC1-213ENST00000512275 TMCO4Q5TGY1 634 aa11.07□□□□□ -0.64
RFC1-213ENST00000512275 PLPP7Q8NBV4 271 aa11.07□□□□□ -0.64
RFC1-213ENST00000512275 STK32AQ8WU08 396 aa11.07□□□□□ -0.64
RFC1-213ENST00000512275 SYNJ2O15056 1496 aa11.06□□□□□ -0.64
RFC1-213ENST00000512275 FAM187AA6NFU0 413 aa11.06□□□□□ -0.64
RFC1-213ENST00000512275 LZTS3O60299 673 aaPredicted RBP11.06□□□□□ -0.64
RFC1-213ENST00000512275 RPIAP49247 311 aa11.06□□□□□ -0.64
RFC1-213ENST00000512275 MYT1Q01538 1121 aa11.06□□□□□ -0.64
RFC1-213ENST00000512275 NCOA4Q13772 614 aa11.06□□□□□ -0.64
RFC1-213ENST00000512275 TMEM164Q5U3C3 297 aa11.06□□□□□ -0.64
RFC1-213ENST00000512275 ZNF787Q6DD87 383 aa11.06□□□□□ -0.64
RFC1-213ENST00000512275 CCDC24Q8N4L8 307 aa11.06□□□□□ -0.64
RFC1-213ENST00000512275 PKD2L1Q9P0L9 805 aa11.06□□□□□ -0.64
RFC1-213ENST00000512275 NOVA2Q9UNW9 492 aaKnown RBP11.06□□□□□ -0.64
RFC1-213ENST00000512275 GRIN2AQ12879 1464 aa11.06□□□□□ -0.64
RFC1-213ENST00000512275 USP17L15C9J2P7 530 aa11.05□□□□□ -0.64
RFC1-213ENST00000512275 USP17L10C9JJH3 530 aa11.05□□□□□ -0.64
RFC1-213ENST00000512275 USP17L13C9JLJ4 530 aa11.05□□□□□ -0.64
RFC1-213ENST00000512275 USP17L12C9JPN9 530 aa11.05□□□□□ -0.64
RFC1-213ENST00000512275 USP17L11C9JVI0 530 aa11.05□□□□□ -0.64
RFC1-213ENST00000512275 USP17L21D6R901 530 aa11.05□□□□□ -0.64
RFC1-213ENST00000512275 USP17L18D6R9N7 530 aa11.05□□□□□ -0.64
RFC1-213ENST00000512275 USP17L22D6RA61 530 aa11.05□□□□□ -0.64
RFC1-213ENST00000512275 USP17L17D6RBQ6 530 aa11.05□□□□□ -0.64
RFC1-213ENST00000512275 USP17L19D6RCP7 530 aa11.05□□□□□ -0.64
RFC1-213ENST00000512275 USP17L20D6RJB6 530 aa11.05□□□□□ -0.64
RFC1-213ENST00000512275 USP17L24Q0WX57 530 aa11.05□□□□□ -0.64
RFC1-213ENST00000512275 CRTC2Q53ET0 693 aaPredicted RBP11.05□□□□□ -0.64
RFC1-213ENST00000512275 MKRN1Q9UHC7 482 aaKnown RBP11.05□□□□□ -0.64
RFC1-213ENST00000512275 CEP162Q5TB80 1403 aa11.04□□□□□ -0.64
RFC1-213ENST00000512275 FOXC1Q12948 553 aa11.04□□□□□ -0.64
RFC1-213ENST00000512275 PTK7Q13308 1070 aa11.04□□□□□ -0.64
RFC1-213ENST00000512275 MAP7D1Q3KQU3 841 aa11.04□□□□□ -0.64
RFC1-213ENST00000512275 ZBTB33Q86T24 672 aa11.04□□□□□ -0.64
RFC1-213ENST00000512275 NPM2Q86SE8 214 aaKnown RBP11.03□□□□□ -0.64
RFC1-213ENST00000512275 CEP170Q5SW79 1584 aa11.03□□□□□ -0.64
RFC1-213ENST00000512275 ATP5J2-PTCD1G3V325 749 aa11.02□□□□□ -0.65
RFC1-213ENST00000512275 CD2BP2O95400 341 aaKnown RBP11.02□□□□□ -0.65
RFC1-213ENST00000512275 RANGAP1P46060 587 aaPredicted RBP11.02□□□□□ -0.65
RFC1-213ENST00000512275 ERFEQ4G0M1 354 aa11.01□□□□□ -0.65
RFC1-213ENST00000512275 C4orf48Q5BLP8 95 aa11.01□□□□□ -0.65
RFC1-213ENST00000512275 DZIP3Q86Y13 1208 aaKnown RBP11.01□□□□□ -0.65
RFC1-213ENST00000512275 ZNF511Q8NB15 262 aa11.01□□□□□ -0.65
RFC1-213ENST00000512275 RGS22Q8NE09 1264 aa11.01□□□□□ -0.65
RFC1-213ENST00000512275 BAP1Q92560 729 aa11.01□□□□□ -0.65
RFC1-213ENST00000512275 C1QTNF2Q9BXJ5 285 aa11.01□□□□□ -0.65
RFC1-213ENST00000512275 IVNS1ABPQ9Y6Y0 642 aa11.01□□□□□ -0.65
RFC1-213ENST00000512275 IQGAP2Q13576 1575 aa11□□□□□ -0.65
RFC1-213ENST00000512275 MFAP1P55081 439 aaKnown RBP11□□□□□ -0.65
RFC1-213ENST00000512275 FAM69CQ0P6D2 419 aa11□□□□□ -0.65
RFC1-213ENST00000512275 TSGA10IPQ3SY00 556 aa11□□□□□ -0.65
RFC1-213ENST00000512275 B4GALNT3Q6L9W6 998 aa11□□□□□ -0.65
RFC1-213ENST00000512275 BPHLQ86WA6 291 aaPredicted RBP11□□□□□ -0.65
RFC1-213ENST00000512275 CHMP7Q8WUX9 453 aaPredicted RBP11□□□□□ -0.65
RFC1-213ENST00000512275 FOXJ1Q92949 421 aa11□□□□□ -0.65
RFC1-213ENST00000512275 CARD14Q9BXL6 1004 aa11□□□□□ -0.65
RFC1-213ENST00000512275 GNEQ9Y223 722 aaKnown RBP11□□□□□ -0.65
RFC1-213ENST00000512275 MAGEB6P1A0A0J9YX57 407 aa10.99□□□□□ -0.65
RFC1-213ENST00000512275 RASA1P20936 1047 aa10.99□□□□□ -0.65
RFC1-213ENST00000512275 EML3Q32P44 896 aa10.99□□□□□ -0.65
RFC1-213ENST00000512275 LARP1Q6PKG0 1096 aaKnown RBP10.99□□□□□ -0.65
RFC1-213ENST00000512275 CCDC85AQ96PX6 553 aaPredicted RBP10.99□□□□□ -0.65
RFC1-213ENST00000512275 SLAIN2Q9P270 581 aa10.99□□□□□ -0.65
RFC1-213ENST00000512275 CLIP1P30622 1438 aa10.99□□□□□ -0.65
RFC1-213ENST00000512275 CLDN10P78369 228 aa10.98□□□□□ -0.65
RFC1-213ENST00000512275 PHLDB3Q6NSJ2 640 aa10.98□□□□□ -0.65
RFC1-213ENST00000512275 ZBTB24O43167 697 aaPredicted RBP10.97□□□□□ -0.65
RFC1-213ENST00000512275 LINC01559Q495D7 138 aa10.97□□□□□ -0.65
RFC1-213ENST00000512275 ANKMY2Q8IV38 441 aa10.97□□□□□ -0.65
RFC1-213ENST00000512275 ZNF775Q96BV0 537 aaPredicted RBP10.97□□□□□ -0.65
RFC1-213ENST00000512275 NUP160Q12769 1436 aa10.96□□□□□ -0.65
RFC1-213ENST00000512275 GIGYF1O75420 1035 aaPredicted RBP10.96□□□□□ -0.65
RFC1-213ENST00000512275 DKK1O94907 266 aa10.96□□□□□ -0.65
RFC1-213ENST00000512275 OGFOD1Q8N543 542 aa10.96□□□□□ -0.65
RFC1-213ENST00000512275 CLP1Q92989 425 aaKnown RBP10.96□□□□□ -0.65
RFC1-213ENST00000512275 CDCA7Q9BWT1 371 aaPredicted RBP10.96□□□□□ -0.65
RFC1-213ENST00000512275 TOR4AQ9NXH8 423 aa10.96□□□□□ -0.65
RFC1-213ENST00000512275 DOLKQ9UPQ8 538 aa10.96□□□□□ -0.65
RFC1-213ENST00000512275 ESPNB1AK53 854 aa10.95□□□□□ -0.66
RFC1-213ENST00000512275 ST8SIA5O15466 376 aa10.95□□□□□ -0.66
RFC1-213ENST00000512275 TRIM50Q86XT4 487 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms