RNA–Protein interactions for RNA: ENST00000496445.5

VTI1A-209, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 853 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-209ENST00000496445 NBPF6Q5VWK0 638 aa19.82■□□□□ 0.76
VTI1A-209ENST00000496445 NBPF4Q96M43 638 aa19.82■□□□□ 0.76
VTI1A-209ENST00000496445 HSP90AB2PQ58FF8 381 aa19.81■□□□□ 0.76
VTI1A-209ENST00000496445 USHBP1Q8N6Y0 703 aa19.81■□□□□ 0.76
VTI1A-209ENST00000496445 EMILIN1Q9Y6C2 1016 aa19.81■□□□□ 0.76
VTI1A-209ENST00000496445 PKD1L3Q7Z443 1732 aa19.8■□□□□ 0.76
VTI1A-209ENST00000496445 DDX54Q8TDD1 881 aaKnown RBP19.8■□□□□ 0.76
VTI1A-209ENST00000496445 LY75O60449 1722 aa19.79■□□□□ 0.76
VTI1A-209ENST00000496445 POLR3GLQ9BT43 218 aa19.79■□□□□ 0.76
VTI1A-209ENST00000496445 CGNL1Q0VF96 1302 aa19.78■□□□□ 0.76
VTI1A-209ENST00000496445 NCAPD2Q15021 1401 aa19.78■□□□□ 0.76
VTI1A-209ENST00000496445 TOGARAM1Q9Y4F4 1720 aa19.78■□□□□ 0.76
VTI1A-209ENST00000496445 NSD2O96028 1365 aa19.78■□□□□ 0.76
VTI1A-209ENST00000496445 PDGFDQ9GZP0 370 aaPredicted RBP19.77■□□□□ 0.76
VTI1A-209ENST00000496445 TUBGCP6Q96RT7 1819 aa19.76■□□□□ 0.75
VTI1A-209ENST00000496445 ZCRB1Q8TBF4 217 aaKnown RBP19.76■□□□□ 0.75
VTI1A-209ENST00000496445 QSER1Q2KHR3 1735 aa19.76■□□□□ 0.75
VTI1A-209ENST00000496445 STK32BQ9NY57 414 aa19.74■□□□□ 0.75
VTI1A-209ENST00000496445 SLC15A2Q16348 729 aa19.73■□□□□ 0.75
VTI1A-209ENST00000496445 SPON1Q9HCB6 807 aa19.73■□□□□ 0.75
VTI1A-209ENST00000496445 RAPGEF4Q8WZA2 1011 aa19.72■□□□□ 0.75
VTI1A-209ENST00000496445 LRRC4BQ9NT99 713 aa19.72■□□□□ 0.75
VTI1A-209ENST00000496445 WASHC2AQ641Q2 1341 aa19.72■□□□□ 0.75
VTI1A-209ENST00000496445 ITGB4P16144 1822 aa19.72■□□□□ 0.75
VTI1A-209ENST00000496445 TATP17735 454 aaPredicted RBP19.71■□□□□ 0.75
VTI1A-209ENST00000496445 PANK3Q9H999 370 aa19.71■□□□□ 0.75
VTI1A-209ENST00000496445 POLKQ9UBT6 870 aa19.71■□□□□ 0.75
VTI1A-209ENST00000496445 UTRNP46939 3433 aa19.71■□□□□ 0.75
VTI1A-209ENST00000496445 PPM1GO15355 546 aaPredicted RBP19.7■□□□□ 0.74
VTI1A-209ENST00000496445 PRIM1P49642 420 aaKnown RBP19.7■□□□□ 0.74
VTI1A-209ENST00000496445 ZNF827Q17R98 1081 aa19.7■□□□□ 0.74
VTI1A-209ENST00000496445 ZBTB7AO95365 584 aa19.69■□□□□ 0.74
VTI1A-209ENST00000496445 SYTL4Q96C24 671 aaPredicted RBP19.69■□□□□ 0.74
VTI1A-209ENST00000496445 PCDH11XQ9BZA7 1347 aa19.69■□□□□ 0.74
VTI1A-209ENST00000496445 PCDH11YQ9BZA8 1340 aa19.69■□□□□ 0.74
VTI1A-209ENST00000496445 TNNT2P45379 298 aaPredicted RBP19.67■□□□□ 0.74
VTI1A-209ENST00000496445 C5P01031 1676 aa19.67■□□□□ 0.74
VTI1A-209ENST00000496445 COL24A1Q17RW2 1714 aa19.67■□□□□ 0.74
VTI1A-209ENST00000496445 CYP27B1O15528 508 aa19.66■□□□□ 0.74
VTI1A-209ENST00000496445 PTGER2P43116 358 aa19.66■□□□□ 0.74
VTI1A-209ENST00000496445 EYA1Q99502 592 aa19.66■□□□□ 0.74
VTI1A-209ENST00000496445 TAF1LQ8IZX4 1826 aa19.66■□□□□ 0.74
VTI1A-209ENST00000496445 SLC27A3Q5K4L6 730 aa19.65■□□□□ 0.74
VTI1A-209ENST00000496445 AKT1S1Q96B36 256 aa19.65■□□□□ 0.74
VTI1A-209ENST00000496445 PPP1R1BQ9UD71 204 aaPredicted RBP19.65■□□□□ 0.74
VTI1A-209ENST00000496445 KCNQ4P56696 695 aa19.64■□□□□ 0.73
VTI1A-209ENST00000496445 EIF4A2Q14240 407 aaKnown RBP19.64■□□□□ 0.73
VTI1A-209ENST00000496445 KIF7Q2M1P5 1343 aa19.64■□□□□ 0.73
VTI1A-209ENST00000496445 ATF5Q9Y2D1 282 aaPredicted RBP19.63■□□□□ 0.73
VTI1A-209ENST00000496445 SGIP1Q9BQI5 828 aa19.62■□□□□ 0.73
VTI1A-209ENST00000496445 MTFR1LQ9H019 292 aa19.62■□□□□ 0.73
VTI1A-209ENST00000496445 IGSF1Q8N6C5 1336 aa19.6■□□□□ 0.73
VTI1A-209ENST00000496445 PNPLA7Q6ZV29 1317 aa19.59■□□□□ 0.73
VTI1A-209ENST00000496445 CCNL1Q9UK58 526 aaPredicted RBP19.59■□□□□ 0.73
VTI1A-209ENST00000496445 PALLDQ8WX93 1383 aa19.58■□□□□ 0.73
VTI1A-209ENST00000496445 PLEKHG2Q9H7P9 1386 aa19.58■□□□□ 0.73
VTI1A-209ENST00000496445 NKX1-1Q15270 411 aaPredicted RBP19.58■□□□□ 0.72
VTI1A-209ENST00000496445 AMER1Q5JTC6 1135 aaPredicted RBP19.57■□□□□ 0.72
VTI1A-209ENST00000496445 MORC1Q86VD1 984 aa19.57■□□□□ 0.72
VTI1A-209ENST00000496445 SPG7Q9UQ90 795 aa19.57■□□□□ 0.72
VTI1A-209ENST00000496445 KNSTRNQ9Y448 316 aa19.57■□□□□ 0.72
VTI1A-209ENST00000496445 GOLGB1Q14789 3259 aaKnown RBP19.57■□□□□ 0.72
VTI1A-209ENST00000496445 C4BP0C0L5 1744 aa19.56■□□□□ 0.72
VTI1A-209ENST00000496445 MPRIPQ6WCQ1 1025 aa19.56■□□□□ 0.72
VTI1A-209ENST00000496445 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.56■□□□□ 0.721e-6■■□□□ 13.5
VTI1A-209ENST00000496445 UBR3Q6ZT12 1888 aa19.54■□□□□ 0.72
VTI1A-209ENST00000496445 PHKG2P15735 406 aa19.54■□□□□ 0.72
VTI1A-209ENST00000496445 PIGBQ92521 554 aa19.54■□□□□ 0.72
VTI1A-209ENST00000496445 TFCP2L1Q9NZI6 479 aa19.54■□□□□ 0.72
VTI1A-209ENST00000496445 IFNL2Q8IZJ0 200 aa19.52■□□□□ 0.72
VTI1A-209ENST00000496445 FHDC1Q9C0D6 1143 aaPredicted RBP19.52■□□□□ 0.72
VTI1A-209ENST00000496445 PER1O15534 1290 aaPredicted RBP19.51■□□□□ 0.71
VTI1A-209ENST00000496445 AEBP1Q8IUX7 1158 aa19.51■□□□□ 0.71
VTI1A-209ENST00000496445 KDRP35968 1356 aa19.5■□□□□ 0.71
VTI1A-209ENST00000496445 MAP3K5Q99683 1374 aa19.5■□□□□ 0.71
VTI1A-209ENST00000496445 SLC16A10Q8TF71 515 aa19.5■□□□□ 0.71
VTI1A-209ENST00000496445 ARXQ96QS3 562 aa19.5■□□□□ 0.71
VTI1A-209ENST00000496445 KDM6AO15550 1401 aaPredicted RBP19.5■□□□□ 0.71
VTI1A-209ENST00000496445 SYT17Q9BSW7 474 aa19.49■□□□□ 0.71
VTI1A-209ENST00000496445 ZNF831Q5JPB2 1677 aa19.49■□□□□ 0.71
VTI1A-209ENST00000496445 VIRMAQ69YN4 1812 aaKnown RBP19.48■□□□□ 0.71
VTI1A-209ENST00000496445 COL23A1Q86Y22 540 aaPredicted RBP19.48■□□□□ 0.71
VTI1A-209ENST00000496445 SMARCC1Q92922 1105 aaPredicted RBP19.48■□□□□ 0.71
VTI1A-209ENST00000496445 TMOD3Q9NYL9 352 aa19.48■□□□□ 0.71
VTI1A-209ENST00000496445 COL5A3P25940 1745 aaPredicted RBP19.48■□□□□ 0.71
VTI1A-209ENST00000496445 SCN11AQ9UI33 1791 aa19.47■□□□□ 0.71
VTI1A-209ENST00000496445 IL13P35225 146 aa19.47■□□□□ 0.71
VTI1A-209ENST00000496445 ASAP1Q9ULH1 1129 aa19.46■□□□□ 0.71
VTI1A-209ENST00000496445 CC2D1BQ5T0F9 858 aaKnown RBP19.45■□□□□ 0.7
VTI1A-209ENST00000496445 AMIGO3Q86WK7 504 aa19.45■□□□□ 0.7
VTI1A-209ENST00000496445 COL3A1P02461 1466 aaPredicted RBP19.45■□□□□ 0.7
VTI1A-209ENST00000496445 LOC102724428A0A0B4J2F2 783 aa19.44■□□□□ 0.7
VTI1A-209ENST00000496445 SIK1P57059 783 aa19.44■□□□□ 0.7
VTI1A-209ENST00000496445 PLEKHO1Q53GL0 409 aaPredicted RBP19.44■□□□□ 0.7
VTI1A-209ENST00000496445 SULT6B1Q6IMI4 303 aa19.44■□□□□ 0.7
VTI1A-209ENST00000496445 ZNF530Q6P9A1 599 aaPredicted RBP19.44■□□□□ 0.7
VTI1A-209ENST00000496445 LINC00116Q8NCU8 138 aa19.44■□□□□ 0.7
VTI1A-209ENST00000496445 NPC1L1Q9UHC9 1359 aa19.44■□□□□ 0.7
VTI1A-209ENST00000496445 POLD1P28340 1107 aa19.43■□□□□ 0.7
VTI1A-209ENST00000496445 MTHFSP49914 203 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms