RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 CEP126Q9P2H0 1117 aa7.34□□□□□ -1.23
CPSF3-205ENST00000489629 TRAK2O60296 914 aa7.33□□□□□ -1.24
CPSF3-205ENST00000489629 ZSCAN1Q8NBB4 408 aa7.33□□□□□ -1.24
CPSF3-205ENST00000489629 OSBPL3Q9H4L5 887 aa7.33□□□□□ -1.24
CPSF3-205ENST00000489629 PCDHB11Q9Y5F2 797 aa7.33□□□□□ -1.24
CPSF3-205ENST00000489629 A0A1W2PRU2 124 aa7.32□□□□□ -1.24
CPSF3-205ENST00000489629 PHTF2Q8N3S3 785 aa7.32□□□□□ -1.24
CPSF3-205ENST00000489629 CCDC85AQ96PX6 553 aaPredicted RBP7.32□□□□□ -1.24
CPSF3-205ENST00000489629 PRM3Q9NNZ6 103 aa7.32□□□□□ -1.24
CPSF3-205ENST00000489629 ITGA6P23229 1130 aa7.31□□□□□ -1.24
CPSF3-205ENST00000489629 GPC1P35052 558 aa7.31□□□□□ -1.24
CPSF3-205ENST00000489629 KRT76Q01546 638 aa7.31□□□□□ -1.24
CPSF3-205ENST00000489629 MCM6Q14566 821 aa7.31□□□□□ -1.24
CPSF3-205ENST00000489629 LYSMD3Q7Z3D4 306 aa7.31□□□□□ -1.24
CPSF3-205ENST00000489629 CDCA7Q9BWT1 371 aaPredicted RBP7.31□□□□□ -1.24
CPSF3-205ENST00000489629 GDPD2Q9HCC8 539 aa7.31□□□□□ -1.24
CPSF3-205ENST00000489629 EIF4G2P78344 907 aaKnown RBP eCLIP7.3□□□□□ -1.24
CPSF3-205ENST00000489629 TSGA10IPQ3SY00 556 aa7.3□□□□□ -1.24
CPSF3-205ENST00000489629 CYP2U1Q7Z449 544 aa7.3□□□□□ -1.24
CPSF3-205ENST00000489629 VAC14Q08AM6 782 aa7.29□□□□□ -1.24
CPSF3-205ENST00000489629 GRIP2Q9C0E4 1043 aa7.29□□□□□ -1.24
CPSF3-205ENST00000489629 CHIC2Q9UKJ5 165 aa7.29□□□□□ -1.24
CPSF3-205ENST00000489629 MEN1O00255 615 aa7.28□□□□□ -1.24
CPSF3-205ENST00000489629 CLN3Q13286 438 aa7.28□□□□□ -1.24
CPSF3-205ENST00000489629 PRICKLE2Q7Z3G6 844 aa7.28□□□□□ -1.24
CPSF3-205ENST00000489629 VWA5B2Q8N398 1253 aa7.28□□□□□ -1.24
CPSF3-205ENST00000489629 RHOQP17081 205 aa7.27□□□□□ -1.25
CPSF3-205ENST00000489629 ABL2P42684 1182 aa7.27□□□□□ -1.25
CPSF3-205ENST00000489629 SV2AQ7L0J3 742 aa7.27□□□□□ -1.25
CPSF3-205ENST00000489629 COL25A1Q9BXS0 654 aaPredicted RBP7.27□□□□□ -1.25
CPSF3-205ENST00000489629 ARHGEF10LQ9HCE6 1279 aa7.27□□□□□ -1.25
CPSF3-205ENST00000489629 CUEDC1Q9NWM3 386 aaPredicted RBP7.27□□□□□ -1.25
CPSF3-205ENST00000489629 FAM181BA6NEQ2 426 aa7.26□□□□□ -1.25
CPSF3-205ENST00000489629 WASHC4Q2M389 1173 aa7.26□□□□□ -1.25
CPSF3-205ENST00000489629 RNFT1Q5M7Z0 435 aa7.26□□□□□ -1.25
CPSF3-205ENST00000489629 CNTNAP3BQ96NU0 1288 aa7.26□□□□□ -1.25
CPSF3-205ENST00000489629 CNTNAP3Q9BZ76 1288 aa7.26□□□□□ -1.25
CPSF3-205ENST00000489629 COG6Q9Y2V7 657 aa7.26□□□□□ -1.25
CPSF3-205ENST00000489629 HRH3Q9Y5N1 445 aa7.26□□□□□ -1.25
CPSF3-205ENST00000489629 SPATA31C2B4DYI2 1134 aa7.25□□□□□ -1.25
CPSF3-205ENST00000489629 GNRH1P01148 92 aa7.25□□□□□ -1.25
CPSF3-205ENST00000489629 IL2RAP01589 272 aa7.25□□□□□ -1.25
CPSF3-205ENST00000489629 NLRP3Q96P20 1036 aa7.25□□□□□ -1.25
CPSF3-205ENST00000489629 CDC14CA4D256 554 aa7.24□□□□□ -1.25
CPSF3-205ENST00000489629 MYCP01106 439 aaPredicted RBP7.24□□□□□ -1.25
CPSF3-205ENST00000489629 POU4F2Q12837 409 aa7.24□□□□□ -1.25
CPSF3-205ENST00000489629 SLFNL1Q499Z3 407 aa7.24□□□□□ -1.25
CPSF3-205ENST00000489629 XAGE2Q96GT9 111 aa7.24□□□□□ -1.25
CPSF3-205ENST00000489629 ESYT1Q9BSJ8 1104 aa7.24□□□□□ -1.25
CPSF3-205ENST00000489629 RAB6BQ9NRW1 208 aa7.24□□□□□ -1.25
CPSF3-205ENST00000489629 DOLKQ9UPQ8 538 aa7.24□□□□□ -1.25
CPSF3-205ENST00000489629 WDR44Q5JSH3 913 aa7.23□□□□□ -1.25
CPSF3-205ENST00000489629 SLC27A3Q5K4L6 730 aa7.23□□□□□ -1.25
CPSF3-205ENST00000489629 NBPF10Q6P3W6 841 aaKnown RBP7.23□□□□□ -1.25
CPSF3-205ENST00000489629 RNF135Q8IUD6 432 aa7.23□□□□□ -1.25
CPSF3-205ENST00000489629 NBPF15Q8N660 670 aa7.23□□□□□ -1.25
CPSF3-205ENST00000489629 CNKSR1Q969H4 720 aa7.23□□□□□ -1.25
CPSF3-205ENST00000489629 ESF1Q9H501 851 aaKnown RBP7.23□□□□□ -1.25
CPSF3-205ENST00000489629 DYRK1BQ9Y463 629 aa7.23□□□□□ -1.25
CPSF3-205ENST00000489629 CENPCQ03188 943 aa7.22□□□□□ -1.25
CPSF3-205ENST00000489629 USP4Q13107 963 aa7.22□□□□□ -1.25
CPSF3-205ENST00000489629 ZNF837Q96EG3 531 aaPredicted RBP7.22□□□□□ -1.25
CPSF3-205ENST00000489629 FHDC1Q9C0D6 1143 aaPredicted RBP7.22□□□□□ -1.25
CPSF3-205ENST00000489629 SLURP2P0DP57 97 aa7.21□□□□□ -1.26
CPSF3-205ENST00000489629 SOX11P35716 441 aa7.21□□□□□ -1.26
CPSF3-205ENST00000489629 DBN1Q16643 649 aa7.21□□□□□ -1.26
CPSF3-205ENST00000489629 TRIM22Q8IYM9 498 aa7.21□□□□□ -1.26
CPSF3-205ENST00000489629 POM121Q96HA1 1249 aa7.21□□□□□ -1.26
CPSF3-205ENST00000489629 GMCL1Q96IK5 515 aa7.21□□□□□ -1.26
CPSF3-205ENST00000489629 WASLO00401 505 aaPredicted RBP7.2□□□□□ -1.26
CPSF3-205ENST00000489629 STAU1O95793 577 aaKnown RBP7.2□□□□□ -1.26
CPSF3-205ENST00000489629 SEMA3FQ13275 785 aa7.2□□□□□ -1.26
CPSF3-205ENST00000489629 GAS6Q14393 721 aa7.2□□□□□ -1.26
CPSF3-205ENST00000489629 MAP7D1Q3KQU3 841 aa7.2□□□□□ -1.26
CPSF3-205ENST00000489629 PLPP7Q8NBV4 271 aa7.2□□□□□ -1.26
CPSF3-205ENST00000489629 OXLD1Q5BKU9 147 aa7.19□□□□□ -1.26
CPSF3-205ENST00000489629 ZNF385CQ66K41 422 aaPredicted RBP7.19□□□□□ -1.26
CPSF3-205ENST00000489629 TAS1R3Q7RTX0 852 aa7.19□□□□□ -1.26
CPSF3-205ENST00000489629 ALG2Q9H553 416 aa7.19□□□□□ -1.26
CPSF3-205ENST00000489629 ETNK1Q9HBU6 452 aa7.19□□□□□ -1.26
CPSF3-205ENST00000489629 SCNN1DP51172 638 aa7.18□□□□□ -1.26
CPSF3-205ENST00000489629 ESCO1Q5FWF5 840 aa7.18□□□□□ -1.26
CPSF3-205ENST00000489629 WHAMMQ8TF30 809 aa7.18□□□□□ -1.26
CPSF3-205ENST00000489629 SIRT1Q96EB6 747 aa7.18□□□□□ -1.26
CPSF3-205ENST00000489629 ZSCAN10Q96SZ4 725 aaPredicted RBP7.18□□□□□ -1.26
CPSF3-205ENST00000489629 TIMMDC1Q9NPL8 285 aa7.18□□□□□ -1.26
CPSF3-205ENST00000489629 PIK3CDO00329 1044 aa7.17□□□□□ -1.26
CPSF3-205ENST00000489629 THBS1P07996 1170 aa7.17□□□□□ -1.26
CPSF3-205ENST00000489629 RIPOR1Q6ZS17 1223 aa7.17□□□□□ -1.26
CPSF3-205ENST00000489629 GAS2L1Q99501 681 aaPredicted RBP7.17□□□□□ -1.26
CPSF3-205ENST00000489629 H7C1W4 665 aa7.16□□□□□ -1.26
CPSF3-205ENST00000489629 ARHGEF15O94989 841 aa7.16□□□□□ -1.26
CPSF3-205ENST00000489629 F11P03951 625 aa7.16□□□□□ -1.26
CPSF3-205ENST00000489629 SRSF11Q05519 484 aaKnown RBP7.16□□□□□ -1.26
CPSF3-205ENST00000489629 FLIIQ13045 1269 aa7.16□□□□□ -1.26
CPSF3-205ENST00000489629 C4orf17Q53FE4 359 aa7.16□□□□□ -1.26
CPSF3-205ENST00000489629 GPR25O00155 361 aa7.15□□□□□ -1.26
CPSF3-205ENST00000489629 ADAMTS2O95450 1211 aa7.15□□□□□ -1.26
CPSF3-205ENST00000489629 PPARGC1BQ86YN6 1023 aaKnown RBP7.15□□□□□ -1.26
CPSF3-205ENST00000489629 GTPBP3Q969Y2 492 aaKnown RBP7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms