RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 DOT1LQ8TEK3 1739 aa19.55■□□□□ 0.72
UPF3A-204ENST00000475218 PDGFDQ9GZP0 370 aaPredicted RBP19.55■□□□□ 0.72
UPF3A-204ENST00000475218 MAP2P11137 1827 aaKnown RBP19.55■□□□□ 0.72
UPF3A-204ENST00000475218 CGNL1Q0VF96 1302 aa19.55■□□□□ 0.72
UPF3A-204ENST00000475218 NCAPD2Q15021 1401 aa19.54■□□□□ 0.72
UPF3A-204ENST00000475218 NSD2O96028 1365 aa19.54■□□□□ 0.72
UPF3A-204ENST00000475218 SMG6Q86US8 1419 aaKnown RBP19.53■□□□□ 0.72
UPF3A-204ENST00000475218 ZCRB1Q8TBF4 217 aaKnown RBP19.52■□□□□ 0.72
UPF3A-204ENST00000475218 PANK3Q9H999 370 aa19.52■□□□□ 0.72
UPF3A-204ENST00000475218 KAT6BQ8WYB5 2073 aa19.52■□□□□ 0.71
UPF3A-204ENST00000475218 POLKQ9UBT6 870 aa19.51■□□□□ 0.71
UPF3A-204ENST00000475218 LRRC4BQ9NT99 713 aa19.5■□□□□ 0.71
UPF3A-204ENST00000475218 WASHC2AQ641Q2 1341 aa19.5■□□□□ 0.71
UPF3A-204ENST00000475218 PKD1L3Q7Z443 1732 aa19.48■□□□□ 0.71
UPF3A-204ENST00000475218 PPM1GO15355 546 aaPredicted RBP19.48■□□□□ 0.71
UPF3A-204ENST00000475218 PRIM1P49642 420 aaKnown RBP19.48■□□□□ 0.71
UPF3A-204ENST00000475218 SLC15A2Q16348 729 aa19.47■□□□□ 0.71
UPF3A-204ENST00000475218 LY75O60449 1722 aa19.47■□□□□ 0.71
UPF3A-204ENST00000475218 RAPGEF4Q8WZA2 1011 aa19.47■□□□□ 0.71
UPF3A-204ENST00000475218 TOGARAM1Q9Y4F4 1720 aa19.46■□□□□ 0.71
UPF3A-204ENST00000475218 CYP27B1O15528 508 aa19.45■□□□□ 0.7
UPF3A-204ENST00000475218 TATP17735 454 aaPredicted RBP19.45■□□□□ 0.7
UPF3A-204ENST00000475218 TNNT2P45379 298 aaPredicted RBP19.45■□□□□ 0.7
UPF3A-204ENST00000475218 ZNF827Q17R98 1081 aa19.45■□□□□ 0.7
UPF3A-204ENST00000475218 EYA1Q99502 592 aa19.45■□□□□ 0.7
UPF3A-204ENST00000475218 KIF7Q2M1P5 1343 aa19.45■□□□□ 0.7
UPF3A-204ENST00000475218 SPON1Q9HCB6 807 aa19.44■□□□□ 0.7
UPF3A-204ENST00000475218 STK32BQ9NY57 414 aa19.44■□□□□ 0.7
UPF3A-204ENST00000475218 KCNQ4P56696 695 aa19.43■□□□□ 0.7
UPF3A-204ENST00000475218 SYTL4Q96C24 671 aaPredicted RBP19.43■□□□□ 0.7
UPF3A-204ENST00000475218 EIF4A2Q14240 407 aaKnown RBP19.42■□□□□ 0.7
UPF3A-204ENST00000475218 ZBTB7AO95365 584 aa19.42■□□□□ 0.7
UPF3A-204ENST00000475218 PTGER2P43116 358 aa19.42■□□□□ 0.7
UPF3A-204ENST00000475218 TUBGCP6Q96RT7 1819 aa19.42■□□□□ 0.7
UPF3A-204ENST00000475218 PCDH11XQ9BZA7 1347 aa19.42■□□□□ 0.7
UPF3A-204ENST00000475218 PCDH11YQ9BZA8 1340 aa19.42■□□□□ 0.7
UPF3A-204ENST00000475218 AKT1S1Q96B36 256 aa19.41■□□□□ 0.7
UPF3A-204ENST00000475218 ITGB4P16144 1822 aa19.4■□□□□ 0.7
UPF3A-204ENST00000475218 QSER1Q2KHR3 1735 aa19.39■□□□□ 0.7
UPF3A-204ENST00000475218 AMER1Q5JTC6 1135 aaPredicted RBP19.39■□□□□ 0.7
UPF3A-204ENST00000475218 SLC27A3Q5K4L6 730 aa19.39■□□□□ 0.69
UPF3A-204ENST00000475218 SGIP1Q9BQI5 828 aa19.39■□□□□ 0.69
UPF3A-204ENST00000475218 IGSF1Q8N6C5 1336 aa19.37■□□□□ 0.69
UPF3A-204ENST00000475218 ATF5Q9Y2D1 282 aaPredicted RBP19.37■□□□□ 0.69
UPF3A-204ENST00000475218 NKX1-1Q15270 411 aaPredicted RBP19.37■□□□□ 0.69
UPF3A-204ENST00000475218 PER1O15534 1290 aaPredicted RBP19.36■□□□□ 0.69
UPF3A-204ENST00000475218 MORC1Q86VD1 984 aa19.35■□□□□ 0.69
UPF3A-204ENST00000475218 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.34■□□□□ 0.69
UPF3A-204ENST00000475218 KNSTRNQ9Y448 316 aa19.34■□□□□ 0.69
UPF3A-204ENST00000475218 COL24A1Q17RW2 1714 aa19.34■□□□□ 0.69
UPF3A-204ENST00000475218 PNPLA7Q6ZV29 1317 aa19.34■□□□□ 0.69
UPF3A-204ENST00000475218 MTFR1LQ9H019 292 aa19.34■□□□□ 0.69
UPF3A-204ENST00000475218 TAF1LQ8IZX4 1826 aa19.33■□□□□ 0.69
UPF3A-204ENST00000475218 PPP1R1BQ9UD71 204 aaPredicted RBP19.33■□□□□ 0.68
UPF3A-204ENST00000475218 CCNL1Q9UK58 526 aaPredicted RBP19.33■□□□□ 0.68
UPF3A-204ENST00000475218 SPG7Q9UQ90 795 aa19.33■□□□□ 0.68
UPF3A-204ENST00000475218 C5P01031 1676 aa19.32■□□□□ 0.68
UPF3A-204ENST00000475218 MPRIPQ6WCQ1 1025 aa19.32■□□□□ 0.68
UPF3A-204ENST00000475218 PHKG2P15735 406 aa19.32■□□□□ 0.68
UPF3A-204ENST00000475218 PIGBQ92521 554 aa19.32■□□□□ 0.68
UPF3A-204ENST00000475218 PALLDQ8WX93 1383 aa19.31■□□□□ 0.68
UPF3A-204ENST00000475218 AEBP1Q8IUX7 1158 aa19.31■□□□□ 0.68
UPF3A-204ENST00000475218 PLEKHG2Q9H7P9 1386 aa19.3■□□□□ 0.68
UPF3A-204ENST00000475218 IL13P35225 146 aa19.28■□□□□ 0.68
UPF3A-204ENST00000475218 IFNL2Q8IZJ0 200 aa19.27■□□□□ 0.68
UPF3A-204ENST00000475218 TFCP2L1Q9NZI6 479 aa19.27■□□□□ 0.68
UPF3A-204ENST00000475218 FHDC1Q9C0D6 1143 aaPredicted RBP19.27■□□□□ 0.67
UPF3A-204ENST00000475218 KDRP35968 1356 aa19.26■□□□□ 0.67
UPF3A-204ENST00000475218 AMIGO3Q86WK7 504 aa19.26■□□□□ 0.67
UPF3A-204ENST00000475218 C4BP0C0L5 1744 aa19.26■□□□□ 0.67
UPF3A-204ENST00000475218 KDM6AO15550 1401 aaPredicted RBP19.26■□□□□ 0.67
UPF3A-204ENST00000475218 ASAP1Q9ULH1 1129 aa19.25■□□□□ 0.67
UPF3A-204ENST00000475218 MTHFSP49914 203 aa19.24■□□□□ 0.67
UPF3A-204ENST00000475218 COL23A1Q86Y22 540 aaPredicted RBP19.24■□□□□ 0.67
UPF3A-204ENST00000475218 SLC16A10Q8TF71 515 aa19.24■□□□□ 0.67
UPF3A-204ENST00000475218 CC2D1BQ5T0F9 858 aaKnown RBP19.24■□□□□ 0.67
UPF3A-204ENST00000475218 ARXQ96QS3 562 aa19.24■□□□□ 0.67
UPF3A-204ENST00000475218 SYT17Q9BSW7 474 aa19.24■□□□□ 0.67
UPF3A-204ENST00000475218 NPC1L1Q9UHC9 1359 aa19.23■□□□□ 0.67
UPF3A-204ENST00000475218 SULT6B1Q6IMI4 303 aa19.23■□□□□ 0.67
UPF3A-204ENST00000475218 SMARCC1Q92922 1105 aaPredicted RBP19.23■□□□□ 0.67
UPF3A-204ENST00000475218 UBR3Q6ZT12 1888 aa19.23■□□□□ 0.67
UPF3A-204ENST00000475218 ATG3Q9NT62 314 aa19.22■□□□□ 0.67
UPF3A-204ENST00000475218 TMOD3Q9NYL9 352 aa19.22■□□□□ 0.67
UPF3A-204ENST00000475218 UTRNP46939 3433 aa19.22■□□□□ 0.67
UPF3A-204ENST00000475218 MAP3K5Q99683 1374 aa19.22■□□□□ 0.67
UPF3A-204ENST00000475218 SMIM5Q71RC9 77 aa19.21■□□□□ 0.67
UPF3A-204ENST00000475218 COL3A1P02461 1466 aaPredicted RBP19.21■□□□□ 0.67
UPF3A-204ENST00000475218 LOC102724428A0A0B4J2F2 783 aa19.21■□□□□ 0.67
UPF3A-204ENST00000475218 SIK1P57059 783 aa19.21■□□□□ 0.67
UPF3A-204ENST00000475218 ITPK1Q13572 414 aa19.21■□□□□ 0.67
UPF3A-204ENST00000475218 PLEKHO1Q53GL0 409 aaPredicted RBP19.21■□□□□ 0.67
UPF3A-204ENST00000475218 ZNF530Q6P9A1 599 aaPredicted RBP19.2■□□□□ 0.66
UPF3A-204ENST00000475218 LINC00116Q8NCU8 138 aa19.2■□□□□ 0.66
UPF3A-204ENST00000475218 GOLGB1Q14789 3259 aaKnown RBP19.2■□□□□ 0.66
UPF3A-204ENST00000475218 SLC4A9Q96Q91 983 aa19.19■□□□□ 0.66
UPF3A-204ENST00000475218 ERVV-2B6SEH9 535 aa19.19■□□□□ 0.66
UPF3A-204ENST00000475218 AMOTQ4VCS5 1084 aa19.19■□□□□ 0.66
UPF3A-204ENST00000475218 DCAF5Q96JK2 942 aa19.19■□□□□ 0.66
UPF3A-204ENST00000475218 ZNF831Q5JPB2 1677 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 403 ms