RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 ZPR1O75312 459 aa15.54■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 PIP4K2AP48426 406 aaPredicted RBP15.54■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 NOL7Q9UMY1 257 aaKnown RBP15.53■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 MKNK2Q9HBH9 465 aa15.53■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 TRAK2O60296 914 aa15.53■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 LARP1BQ659C4 914 aaKnown RBP15.53■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 DDX11Q96FC9 970 aa15.53■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 PRAM1Q96QH2 718 aa15.53■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 ZBED9Q6R2W3 1325 aa15.53■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 BTBD11A6QL63 1104 aa15.53■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 BCAR3O75815 825 aa15.53■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 PTPRGP23470 1445 aa15.53■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 NACADO15069 1562 aa15.53■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 KLHL10Q6JEL2 608 aa15.53■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 CCDC91Q7Z6B0 441 aa15.52■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 IGHMBP2P38935 993 aaKnown RBP15.52■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 CEP57L1Q8IYX8 460 aa15.52■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 SMARCA2P51531 1590 aa15.52■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 SEC63Q9UGP8 760 aaKnown RBP15.52■□□□□ 0.08
NPHP3-ACAD11-201ENST00000471702 GOPCQ9HD26 462 aa15.52■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 PPP4R3AQ6IN85 833 aa15.51■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 EIF3JO75822 258 aaKnown RBP15.51■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 ZNF710Q8N1W2 664 aa15.51■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 SLC26A8Q96RN1 970 aa15.51■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 SERPINA10Q9UK55 444 aa15.51■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 POTEJP0CG39 1038 aa15.51■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 RFX1P22670 979 aa15.51■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 EXOSC9Q06265 439 aaKnown RBP15.51■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 TNIP1Q15025 636 aa15.51■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 CCDC96Q2M329 555 aa15.51■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 SSX2IPQ9Y2D8 614 aa15.51■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 FILIP1Q7Z7B0 1213 aa15.51■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 LRRCC1Q9C099 1032 aa15.51■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 SPG7Q9UQ90 795 aa15.51■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 UBE4AQ14139 1066 aa15.5■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 SPATA24Q86W54 205 aa15.5■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 CFAP57Q96MR6 1250 aa15.5■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 IL1RAPL2Q9NP60 686 aa15.5■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 CEP126Q9P2H0 1117 aa15.5■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 LETM1O95202 739 aaPredicted RBP15.5■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 LRSAM1Q6UWE0 723 aa15.5■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 GSTTP1A0A1W2PQM5 241 aa15.5■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 SRGAP3O43295 1099 aa15.5■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 TCP11L2Q8N4U5 519 aa15.5■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 VTI1AQ96AJ9 217 aa15.5■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 ADAMTS8Q9UP79 889 aa15.5■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 METTL24Q5JXM2 366 aa15.49■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 DACH1Q9UI36 760 aa15.49■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 RRS1Q15050 365 aaKnown RBP15.49■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 AIDAQ96BJ3 306 aa15.49■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 CCP110O43303 1012 aa15.49■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 UQCRHP07919 91 aa15.49■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 MIS18AQ9NYP9 233 aa15.49■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 CCDC192P0DO97 292 aa15.49■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 ZSCAN25Q6NSZ9 544 aa15.48■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 CCDC102AQ96A19 550 aa15.48■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 MPRIPQ6WCQ1 1025 aa15.48■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 JAKMIP3Q5VZ66 844 aa15.48■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 SPTY2D1Q68D10 685 aaPredicted RBP15.48■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 BLOC1S2Q6QNY1 142 aa15.48■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 DZIP1Q86YF9 867 aaKnown RBP15.47■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 PPP1R12BO60237 982 aaPredicted RBP15.47■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 MAP2K1Q02750 393 aaPredicted RBP15.47■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 JAKMIP1Q96N16 626 aaKnown RBP15.47■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.47■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 SMC1AQ14683 1233 aaKnown RBP15.47■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 CDCA7LQ96GN5 454 aa15.47■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 KIF7Q2M1P5 1343 aa15.47■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 IL27Q8NEV9 243 aa15.47■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 TAF4BQ92750 862 aa15.47■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 EPB41L2O43491 1005 aaKnown RBP15.46■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 KRT85P78386 507 aa15.46■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 ANKRD1Q15327 319 aa15.46■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 CTNNA2P26232 953 aa15.46■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 CAMK4Q16566 473 aa15.46■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 ERICH4A6NGS2 130 aa15.46■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 TMX1Q9H3N1 280 aa15.46■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 PUF60Q9UHX1 559 aaKnown RBP15.46■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 USP8P40818 1118 aa15.46■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 ZNF354CQ86Y25 554 aa15.46■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 SPATA32Q96LK8 384 aa15.46■□□□□ 0.07
NPHP3-ACAD11-201ENST00000471702 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.46■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 GUCY1B3Q02153 619 aa15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CFAP45Q9UL16 551 aa15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CFAP100Q494V2 611 aa15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CCDC88BA6NC98 1476 aa15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 RANBP6O60518 1105 aaKnown RBP15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 ZNF397Q8NF99 534 aaPredicted RBP15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 SAMM50Q9Y512 469 aa15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 RABEP1Q15276 862 aa15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CETN2P41208 172 aa15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CFAP70Q5T0N1 1121 aa15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CDK19Q9BWU1 502 aa15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CNTLNQ9NXG0 1405 aa15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 ZNF644Q9H582 1327 aaPredicted RBP15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 STARD3NLO95772 234 aa15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CCDC178Q5BJE1 867 aa15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 VAT1LQ9HCJ6 419 aa15.45■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 MBD3O95983 291 aa15.44■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 ARL1P40616 181 aaPredicted RBP15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms