RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 TWISTNBQ3B726 338 aaPredicted RBP8.95□□□□□ -0.98
USP48-206ENST00000464577 SAMD1Q6SPF0 538 aaPredicted RBP8.95□□□□□ -0.98
USP48-206ENST00000464577 ANKRD44Q8N8A2 993 aa8.95□□□□□ -0.98
USP48-206ENST00000464577 GPT2Q8TD30 523 aa8.95□□□□□ -0.98
USP48-206ENST00000464577 TMEM131LA2VDJ0 1609 aa8.95□□□□□ -0.98
USP48-206ENST00000464577 DYNC1I1O14576 645 aa8.95□□□□□ -0.98
USP48-206ENST00000464577 REC8O95072 547 aa8.95□□□□□ -0.98
USP48-206ENST00000464577 NCLP19338 710 aaKnown RBP8.95□□□□□ -0.98
USP48-206ENST00000464577 GGT6Q6P531 493 aa8.95□□□□□ -0.98
USP48-206ENST00000464577 RPAP2Q8IXW5 612 aaPredicted RBP8.95□□□□□ -0.98
USP48-206ENST00000464577 POLKQ9UBT6 870 aa8.95□□□□□ -0.98
USP48-206ENST00000464577 R3HCC1Q9Y3T6 440 aaKnown RBP8.95□□□□□ -0.98
USP48-206ENST00000464577 RIMS2Q9UQ26 1411 aa8.94□□□□□ -0.98
USP48-206ENST00000464577 DLC1Q96QB1 1528 aa8.94□□□□□ -0.98
USP48-206ENST00000464577 PRPF40AO75400 957 aaKnown RBP8.94□□□□□ -0.98
USP48-206ENST00000464577 SAFB2Q14151 953 aaKnown RBP eCLIP8.94□□□□□ -0.985e-8■■□□□ 12.3
USP48-206ENST00000464577 PHACTR3Q96KR7 559 aa8.94□□□□□ -0.98
USP48-206ENST00000464577 SLC52A1Q9NWF4 448 aa8.94□□□□□ -0.98
USP48-206ENST00000464577 ZDHHC9Q9Y397 364 aa8.94□□□□□ -0.98
USP48-206ENST00000464577 HAP1P54257 671 aaPredicted RBP8.93□□□□□ -0.98
USP48-206ENST00000464577 PKP1Q13835 747 aa8.93□□□□□ -0.98
USP48-206ENST00000464577 PRAM1Q96QH2 718 aa8.93□□□□□ -0.98
USP48-206ENST00000464577 MINK1Q8N4C8 1332 aaPredicted RBP8.93□□□□□ -0.98
USP48-206ENST00000464577 AATKQ6ZMQ8 1374 aa8.93□□□□□ -0.98
USP48-206ENST00000464577 RGS12O14924 1447 aa8.93□□□□□ -0.98
USP48-206ENST00000464577 AK9Q5TCS8 1911 aa8.93□□□□□ -0.98
USP48-206ENST00000464577 UQCRHLA0A096LP55 91 aa8.93□□□□□ -0.98
USP48-206ENST00000464577 UQCRHP07919 91 aa8.93□□□□□ -0.98
USP48-206ENST00000464577 SDSP20132 328 aa8.93□□□□□ -0.98
USP48-206ENST00000464577 IL13P35225 146 aa8.93□□□□□ -0.98
USP48-206ENST00000464577 MCM2P49736 904 aa8.93□□□□□ -0.98
USP48-206ENST00000464577 SASS6Q6UVJ0 657 aa8.93□□□□□ -0.98
USP48-206ENST00000464577 ZGPATQ8N5A5 531 aaKnown RBP8.93□□□□□ -0.98
USP48-206ENST00000464577 THUMPD2Q9BTF0 503 aaKnown RBP8.93□□□□□ -0.98
USP48-206ENST00000464577 TMEM63CQ9P1W3 806 aa8.93□□□□□ -0.98
USP48-206ENST00000464577 DLG5Q8TDM6 1919 aa8.93□□□□□ -0.98
USP48-206ENST00000464577 ERC2O15083 957 aa8.92□□□□□ -0.98
USP48-206ENST00000464577 XPCQ01831 940 aaPredicted RBP8.92□□□□□ -0.98
USP48-206ENST00000464577 NUTM2DQ5VT03 806 aaPredicted RBP8.92□□□□□ -0.98
USP48-206ENST00000464577 CEP85Q6P2H3 762 aa8.92□□□□□ -0.98
USP48-206ENST00000464577 C8orf58Q8NAV2 365 aa8.92□□□□□ -0.98
USP48-206ENST00000464577 PLSCR2Q9NRY7 297 aa8.92□□□□□ -0.98
USP48-206ENST00000464577 STK26Q9P289 416 aa8.92□□□□□ -0.98
USP48-206ENST00000464577 RBM27Q9P2N5 1060 aaKnown RBP8.92□□□□□ -0.98
USP48-206ENST00000464577 ALKQ9UM73 1620 aa8.92□□□□□ -0.98
USP48-206ENST00000464577 DIP2CQ9Y2E4 1556 aa8.92□□□□□ -0.98
USP48-206ENST00000464577 MAP2P11137 1827 aaKnown RBP8.92□□□□□ -0.98
USP48-206ENST00000464577 MYO5BQ9ULV0 1848 aa8.92□□□□□ -0.98
USP48-206ENST00000464577 CDK19Q9BWU1 502 aa8.92□□□□□ -0.98
USP48-206ENST00000464577 OSBPL3Q9H4L5 887 aa8.92□□□□□ -0.98
USP48-206ENST00000464577 PREX1Q8TCU6 1659 aa8.91□□□□□ -0.98
USP48-206ENST00000464577 EDC4Q6P2E9 1401 aaKnown RBP8.91□□□□□ -0.98
USP48-206ENST00000464577 RTL1A6NKG5 1358 aa8.91□□□□□ -0.98
USP48-206ENST00000464577 BRD1O95696 1058 aa8.91□□□□□ -0.98
USP48-206ENST00000464577 CUL4AQ13619 759 aa8.91□□□□□ -0.98
USP48-206ENST00000464577 IDI1Q13907 227 aa8.91□□□□□ -0.98
USP48-206ENST00000464577 C16orf71Q8IYS4 520 aaPredicted RBP8.91□□□□□ -0.98
USP48-206ENST00000464577 CABP1Q9NZU7 370 aa8.91□□□□□ -0.98
USP48-206ENST00000464577 NRKQ7Z2Y5 1582 aa8.91□□□□□ -0.98
USP48-206ENST00000464577 PTPRCP08575 1304 aa8.9□□□□□ -0.98
USP48-206ENST00000464577 SYCE3A1L190 88 aa8.9□□□□□ -0.98
USP48-206ENST00000464577 HMOX1P09601 288 aa8.9□□□□□ -0.98
USP48-206ENST00000464577 RBM10P98175 930 aaKnown RBP8.9□□□□□ -0.98
USP48-206ENST00000464577 SYAP1Q96A49 352 aaPredicted RBP8.9□□□□□ -0.98
USP48-206ENST00000464577 IL17RAQ96F46 866 aa8.9□□□□□ -0.98
USP48-206ENST00000464577 FAM13BQ9NYF5 915 aa8.9□□□□□ -0.98
USP48-206ENST00000464577 KIAA0232Q92628 1395 aa8.9□□□□□ -0.98
USP48-206ENST00000464577 ELL2O00472 640 aaPredicted RBP8.9□□□□□ -0.99
USP48-206ENST00000464577 SMAP1Q8IYB5 467 aaPredicted RBP8.9□□□□□ -0.99
USP48-206ENST00000464577 OTUD7AQ8TE49 926 aaPredicted RBP8.9□□□□□ -0.99
USP48-206ENST00000464577 INTS4Q96HW7 963 aaKnown RBP8.9□□□□□ -0.99
USP48-206ENST00000464577 TSPY26PQ9H489 355 aa8.9□□□□□ -0.99
USP48-206ENST00000464577 ZNF219Q9P2Y4 722 aaPredicted RBP8.9□□□□□ -0.99
USP48-206ENST00000464577 NEO1Q92859 1461 aa8.9□□□□□ -0.99
USP48-206ENST00000464577 SSH2Q76I76 1423 aa8.9□□□□□ -0.99
USP48-206ENST00000464577 MSH6P52701 1360 aa8.89□□□□□ -0.99
USP48-206ENST00000464577 PHF14O94880 888 aa8.89□□□□□ -0.99
USP48-206ENST00000464577 ANAPC15P60006 121 aa8.89□□□□□ -0.99
USP48-206ENST00000464577 KIAA2012Q0VF49 1180 aa8.89□□□□□ -0.99
USP48-206ENST00000464577 KLHL34Q8N239 644 aa8.89□□□□□ -0.99
USP48-206ENST00000464577 TMX3Q96JJ7 454 aa8.89□□□□□ -0.99
USP48-206ENST00000464577 TUBGCP6Q96RT7 1819 aa8.89□□□□□ -0.99
USP48-206ENST00000464577 HMMRO75330 724 aa8.89□□□□□ -0.99
USP48-206ENST00000464577 UVSSAQ2YD98 709 aa8.89□□□□□ -0.99
USP48-206ENST00000464577 FAM184AQ8NB25 1140 aa8.89□□□□□ -0.99
USP48-206ENST00000464577 NSFL1CQ9UNZ2 370 aaKnown RBP8.89□□□□□ -0.99
USP48-206ENST00000464577 MYCNP04198 464 aaPredicted RBP8.88□□□□□ -0.99
USP48-206ENST00000464577 MON2Q7Z3U7 1717 aa8.88□□□□□ -0.99
USP48-206ENST00000464577 PRDM4Q9UKN5 801 aa8.88□□□□□ -0.99
USP48-206ENST00000464577 RIMBP3CA6NJZ7 1639 aa8.88□□□□□ -0.99
USP48-206ENST00000464577 RIMBP3BA6NNM3 1639 aa8.88□□□□□ -0.99
USP48-206ENST00000464577 RIMBP3Q9UFD9 1639 aa8.88□□□□□ -0.99
USP48-206ENST00000464577 EPB41L2O43491 1005 aaKnown RBP8.87□□□□□ -0.99
USP48-206ENST00000464577 MCCP23508 829 aa8.87□□□□□ -0.99
USP48-206ENST00000464577 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP48-206ENST00000464577 EMILIN1Q9Y6C2 1016 aa8.87□□□□□ -0.99
USP48-206ENST00000464577 SMARCA5O60264 1052 aaPredicted RBP8.87□□□□□ -0.99
USP48-206ENST00000464577 NEK4P51957 841 aa8.87□□□□□ -0.99
USP48-206ENST00000464577 PDE1AP54750 535 aa8.87□□□□□ -0.99
USP48-206ENST00000464577 MYRIPQ8NFW9 859 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms