RNA–Protein interactions for RNA: ENST00000449049.7

SHMT2-203, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 2,121 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-203ENST00000449049 DLG5Q8TDM6 1919 aa18.54■□□□□ 0.56
SHMT2-203ENST00000449049 TATP17735 454 aaPredicted RBP18.53■□□□□ 0.56
SHMT2-203ENST00000449049 ZBED9Q6R2W3 1325 aa18.53■□□□□ 0.56
SHMT2-203ENST00000449049 ATRNO75882 1429 aa18.53■□□□□ 0.56
SHMT2-203ENST00000449049 SENP3-EIF4A1A0A087X0R7 540 aa18.53■□□□□ 0.56
SHMT2-203ENST00000449049 IL2RBP14784 551 aa18.53■□□□□ 0.56
SHMT2-203ENST00000449049 MTHFSDQ2M296 383 aaKnown RBP18.53■□□□□ 0.56
SHMT2-203ENST00000449049 USP35Q9P2H5 1018 aa18.53■□□□□ 0.56
SHMT2-203ENST00000449049 AMOTQ4VCS5 1084 aa18.52■□□□□ 0.56
SHMT2-203ENST00000449049 GAS2L2Q8NHY3 880 aa18.52■□□□□ 0.56
SHMT2-203ENST00000449049 RRP7AQ9Y3A4 280 aaKnown RBP18.52■□□□□ 0.56
SHMT2-203ENST00000449049 CCDC27Q2M243 656 aa18.52■□□□□ 0.55
SHMT2-203ENST00000449049 PLEKHO1Q53GL0 409 aaPredicted RBP18.52■□□□□ 0.55
SHMT2-203ENST00000449049 PHF23Q9BUL5 403 aaPredicted RBP18.52■□□□□ 0.55
SHMT2-203ENST00000449049 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.52■□□□□ 0.55
SHMT2-203ENST00000449049 SHANK3Q9BYB0 1731 aa18.51■□□□□ 0.55
SHMT2-203ENST00000449049 GLI3P10071 1580 aa18.51■□□□□ 0.55
SHMT2-203ENST00000449049 BARGINQ6ZT62 677 aa18.5■□□□□ 0.55
SHMT2-203ENST00000449049 RIPK4P57078 832 aa18.5■□□□□ 0.55
SHMT2-203ENST00000449049 CCDC9Q9Y3X0 531 aaKnown RBP18.5■□□□□ 0.55
SHMT2-203ENST00000449049 ZNF521Q96K83 1311 aa18.49■□□□□ 0.55
SHMT2-203ENST00000449049 NEUROD2Q15784 382 aa18.49■□□□□ 0.55
SHMT2-203ENST00000449049 TRPC5Q9UL62 973 aaPredicted RBP18.49■□□□□ 0.55
SHMT2-203ENST00000449049 CDCA7Q9BWT1 371 aaPredicted RBP18.49■□□□□ 0.55
SHMT2-203ENST00000449049 TRIM35Q9UPQ4 493 aa18.49■□□□□ 0.55
SHMT2-203ENST00000449049 SALL2Q9Y467 1007 aaPredicted RBP18.49■□□□□ 0.55
SHMT2-203ENST00000449049 SPG7Q9UQ90 795 aa18.48■□□□□ 0.55
SHMT2-203ENST00000449049 LRRC37A3O60309 1634 aa18.48■□□□□ 0.55
SHMT2-203ENST00000449049 MAP3K5Q99683 1374 aa18.47■□□□□ 0.55
SHMT2-203ENST00000449049 THSD7AQ9UPZ6 1657 aa18.47■□□□□ 0.55
SHMT2-203ENST00000449049 WWC1Q8IX03 1113 aa18.47■□□□□ 0.55
SHMT2-203ENST00000449049 LMOD3Q0VAK6 560 aa18.46■□□□□ 0.55
SHMT2-203ENST00000449049 ZNF530Q6P9A1 599 aaPredicted RBP18.46■□□□□ 0.55
SHMT2-203ENST00000449049 ILDR1Q86SU0 546 aaPredicted RBP18.46■□□□□ 0.55
SHMT2-203ENST00000449049 GJD4Q96KN9 370 aaPredicted RBP18.46■□□□□ 0.55
SHMT2-203ENST00000449049 ADAMTS7Q9UKP4 1686 aa18.46■□□□□ 0.55
SHMT2-203ENST00000449049 TNS2Q63HR2 1409 aa18.46■□□□□ 0.55
SHMT2-203ENST00000449049 AKAP4Q5JQC9 854 aa18.46■□□□□ 0.55
SHMT2-203ENST00000449049 ZNF772Q68DY9 489 aaPredicted RBP18.46■□□□□ 0.55
SHMT2-203ENST00000449049 ZCRB1Q8TBF4 217 aaKnown RBP18.46■□□□□ 0.55
SHMT2-203ENST00000449049 HTATSF1O43719 755 aaKnown RBP18.45■□□□□ 0.54
SHMT2-203ENST00000449049 PCDH11XQ9BZA7 1347 aa18.45■□□□□ 0.54
SHMT2-203ENST00000449049 PCDH11YQ9BZA8 1340 aa18.45■□□□□ 0.54
SHMT2-203ENST00000449049 GNAT3A8MTJ3 354 aa18.44■□□□□ 0.54
SHMT2-203ENST00000449049 QTRT2Q9H974 415 aaKnown RBP18.44■□□□□ 0.54
SHMT2-203ENST00000449049 PHKG2P15735 406 aa18.43■□□□□ 0.54
SHMT2-203ENST00000449049 C1orf141Q5JVX7 400 aa18.43■□□□□ 0.54
SHMT2-203ENST00000449049 VIRMAQ69YN4 1812 aaKnown RBP18.43■□□□□ 0.54
SHMT2-203ENST00000449049 CYP27B1O15528 508 aa18.43■□□□□ 0.54
SHMT2-203ENST00000449049 FAM98CQ17RN3 349 aaKnown RBP18.43■□□□□ 0.54
SHMT2-203ENST00000449049 IFNL2Q8IZJ0 200 aa18.43■□□□□ 0.54
SHMT2-203ENST00000449049 WDR63Q8IWG1 891 aa18.42■□□□□ 0.54
SHMT2-203ENST00000449049 ONECUT3O60422 494 aaPredicted RBP18.41■□□□□ 0.54
SHMT2-203ENST00000449049 PDE3BQ13370 1112 aa18.41■□□□□ 0.54
SHMT2-203ENST00000449049 RTF1Q92541 710 aaKnown RBP18.41■□□□□ 0.54
SHMT2-203ENST00000449049 SCN11AQ9UI33 1791 aa18.41■□□□□ 0.54
SHMT2-203ENST00000449049 CEMIPQ8WUJ3 1361 aa18.4■□□□□ 0.54
SHMT2-203ENST00000449049 EXOC5O00471 708 aa18.4■□□□□ 0.54
SHMT2-203ENST00000449049 KDM6AO15550 1401 aaPredicted RBP18.4■□□□□ 0.54
SHMT2-203ENST00000449049 GOLGA2Q08379 1002 aa18.4■□□□□ 0.54
SHMT2-203ENST00000449049 DCTN1Q14203 1278 aa18.4■□□□□ 0.54
SHMT2-203ENST00000449049 DDB1Q16531 1140 aa18.4■□□□□ 0.54
SHMT2-203ENST00000449049 MCM10Q7L590 875 aa18.4■□□□□ 0.54
SHMT2-203ENST00000449049 HSP90AB1P08238 724 aaKnown RBP18.39■□□□□ 0.53
SHMT2-203ENST00000449049 NKX1-1Q15270 411 aaPredicted RBP18.39■□□□□ 0.53
SHMT2-203ENST00000449049 IL17REQ8NFR9 667 aa18.39■□□□□ 0.53
SHMT2-203ENST00000449049 THUMPD2Q9BTF0 503 aaKnown RBP18.39■□□□□ 0.53
SHMT2-203ENST00000449049 IL16Q14005 1332 aa18.39■□□□□ 0.53
SHMT2-203ENST00000449049 CALD1Q05682 793 aaKnown RBP18.38■□□□□ 0.53
SHMT2-203ENST00000449049 RGS17Q9UGC6 210 aaPredicted RBP18.38■□□□□ 0.53
SHMT2-203ENST00000449049 MRC1P22897 1456 aa18.38■□□□□ 0.53
SHMT2-203ENST00000449049 RNMTO43148 476 aaKnown RBP18.37■□□□□ 0.53
SHMT2-203ENST00000449049 MPRIPQ6WCQ1 1025 aa18.37■□□□□ 0.53
SHMT2-203ENST00000449049 DDX54Q8TDD1 881 aaKnown RBP18.37■□□□□ 0.53
SHMT2-203ENST00000449049 DCAF5Q96JK2 942 aa18.37■□□□□ 0.53
SHMT2-203ENST00000449049 SIPA1L3O60292 1781 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-203ENST00000449049 RBM6P78332 1123 aaKnown RBP18.37■□□□□ 0.53
SHMT2-203ENST00000449049 CDCA7LQ96GN5 454 aa18.37■□□□□ 0.53
SHMT2-203ENST00000449049 LGR6Q9HBX8 967 aa18.37■□□□□ 0.53
SHMT2-203ENST00000449049 TOGARAM1Q9Y4F4 1720 aa18.36■□□□□ 0.53
SHMT2-203ENST00000449049 SLFN5Q08AF3 891 aa18.36■□□□□ 0.53
SHMT2-203ENST00000449049 SPINK5Q9NQ38 1064 aaPredicted RBP18.36■□□□□ 0.53
SHMT2-203ENST00000449049 E9PSI1 815 aa18.35■□□□□ 0.53
SHMT2-203ENST00000449049 TRMT2AQ8IZ69 625 aaKnown RBP18.35■□□□□ 0.53
SHMT2-203ENST00000449049 IFT57Q9NWB7 429 aa18.34■□□□□ 0.53
SHMT2-203ENST00000449049 ZNF853P0CG23 659 aa18.34■□□□□ 0.53
SHMT2-203ENST00000449049 SEPT12Q8IYM1 358 aa18.33■□□□□ 0.52
SHMT2-203ENST00000449049 MARCH10Q8NA82 808 aaPredicted RBP18.33■□□□□ 0.52
SHMT2-203ENST00000449049 A0A0G2JS52 829 aa18.32■□□□□ 0.52
SHMT2-203ENST00000449049 CFAP44Q96MT7 982 aa18.32■□□□□ 0.52
SHMT2-203ENST00000449049 GNAI1P63096 354 aa18.32■□□□□ 0.52
SHMT2-203ENST00000449049 DOT1LQ8TEK3 1739 aa18.32■□□□□ 0.52
SHMT2-203ENST00000449049 DUSP27Q5VZP5 1158 aa18.31■□□□□ 0.52
SHMT2-203ENST00000449049 POTEAQ6S8J7 498 aa18.31■□□□□ 0.52
SHMT2-203ENST00000449049 MYH16Q9H6N6 1097 aa18.31■□□□□ 0.52
SHMT2-203ENST00000449049 KDM3BQ7LBC6 1761 aa18.31■□□□□ 0.52
SHMT2-203ENST00000449049 RXRBP28702 533 aa18.31■□□□□ 0.52
SHMT2-203ENST00000449049 TEFQ10587 303 aa18.31■□□□□ 0.52
SHMT2-203ENST00000449049 BABAM1Q9NWV8 329 aa18.31■□□□□ 0.52
SHMT2-203ENST00000449049 BRWD3Q6RI45 1802 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms