RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 LTV1Q96GA3 475 aaPredicted RBP16.84■□□□□ 0.29
PTPRF-208ENST00000437607 ITGB4P16144 1822 aa16.84■□□□□ 0.29
PTPRF-208ENST00000437607 ST20-MTHFSA0A0A6YYL1 179 aa16.83■□□□□ 0.28
PTPRF-208ENST00000437607 MEGF6O75095 1541 aa16.83■□□□□ 0.28
PTPRF-208ENST00000437607 MAP3K19Q56UN5 1328 aa16.83■□□□□ 0.28
PTPRF-208ENST00000437607 NSD2O96028 1365 aa16.82■□□□□ 0.28
PTPRF-208ENST00000437607 HOXC9P31274 260 aa16.82■□□□□ 0.28
PTPRF-208ENST00000437607 AKT1S1Q96B36 256 aa16.82■□□□□ 0.28
PTPRF-208ENST00000437607 DDX54Q8TDD1 881 aaKnown RBP16.81■□□□□ 0.28
PTPRF-208ENST00000437607 C5P01031 1676 aa16.81■□□□□ 0.28
PTPRF-208ENST00000437607 MAP3K5Q99683 1374 aa16.8■□□□□ 0.28
PTPRF-208ENST00000437607 ARXQ96QS3 562 aa16.8■□□□□ 0.28
PTPRF-208ENST00000437607 TOGARAM1Q9Y4F4 1720 aa16.79■□□□□ 0.28
PTPRF-208ENST00000437607 ANKRD36BQ8N2N9 1353 aa16.79■□□□□ 0.28
PTPRF-208ENST00000437607 COG3Q96JB2 828 aa16.79■□□□□ 0.28
PTPRF-208ENST00000437607 PNPLA7Q6ZV29 1317 aa16.78■□□□□ 0.28
PTPRF-208ENST00000437607 MAP2P11137 1827 aaKnown RBP16.78■□□□□ 0.28
PTPRF-208ENST00000437607 KCNQ4P56696 695 aa16.78■□□□□ 0.28
PTPRF-208ENST00000437607 PRIM1P49642 420 aaKnown RBP16.77■□□□□ 0.28
PTPRF-208ENST00000437607 SLC27A3Q5K4L6 730 aa16.77■□□□□ 0.28
PTPRF-208ENST00000437607 ZNF784Q8NCA9 323 aaPredicted RBP16.77■□□□□ 0.28
PTPRF-208ENST00000437607 RTL1A6NKG5 1358 aa16.77■□□□□ 0.27
PTPRF-208ENST00000437607 PKD1L3Q7Z443 1732 aa16.76■□□□□ 0.27
PTPRF-208ENST00000437607 ANKRD26Q9UPS8 1709 aa16.76■□□□□ 0.27
PTPRF-208ENST00000437607 AMPHP49418 695 aa16.76■□□□□ 0.27
PTPRF-208ENST00000437607 FYB1O15117 783 aa16.75■□□□□ 0.27
PTPRF-208ENST00000437607 RRS1Q15050 365 aaKnown RBP16.75■□□□□ 0.27
PTPRF-208ENST00000437607 NBPF6Q5VWK0 638 aa16.75■□□□□ 0.27
PTPRF-208ENST00000437607 ZCRB1Q8TBF4 217 aaKnown RBP16.75■□□□□ 0.27
PTPRF-208ENST00000437607 NBPF4Q96M43 638 aa16.75■□□□□ 0.27
PTPRF-208ENST00000437607 SLC16A10Q8TF71 515 aa16.74■□□□□ 0.27
PTPRF-208ENST00000437607 SYTL4Q96C24 671 aaPredicted RBP16.74■□□□□ 0.27
PTPRF-208ENST00000437607 GGNBP2Q9H3C7 697 aa16.74■□□□□ 0.27
PTPRF-208ENST00000437607 UBR3Q6ZT12 1888 aa16.73■□□□□ 0.27
PTPRF-208ENST00000437607 USHBP1Q8N6Y0 703 aa16.73■□□□□ 0.27
PTPRF-208ENST00000437607 SLC24A1O60721 1099 aa16.72■□□□□ 0.27
PTPRF-208ENST00000437607 TMF1P82094 1093 aa16.72■□□□□ 0.27
PTPRF-208ENST00000437607 TFCP2L1Q9NZI6 479 aa16.71■□□□□ 0.27
PTPRF-208ENST00000437607 CCNL1Q9UK58 526 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-208ENST00000437607 INSRP06213 1382 aa16.69■□□□□ 0.26
PTPRF-208ENST00000437607 HSP90AB2PQ58FF8 381 aa16.69■□□□□ 0.26
PTPRF-208ENST00000437607 C4BP0C0L5 1744 aa16.69■□□□□ 0.26
PTPRF-208ENST00000437607 CGNL1Q0VF96 1302 aa16.69■□□□□ 0.26
PTPRF-208ENST00000437607 KIF7Q2M1P5 1343 aa16.69■□□□□ 0.26
PTPRF-208ENST00000437607 POLD1P28340 1107 aa16.68■□□□□ 0.26
PTPRF-208ENST00000437607 CDCA8Q53HL2 280 aa16.68■□□□□ 0.26
PTPRF-208ENST00000437607 NLGN2Q8NFZ4 835 aa16.68■□□□□ 0.26
PTPRF-208ENST00000437607 POLR3GLQ9BT43 218 aa16.68■□□□□ 0.26
PTPRF-208ENST00000437607 SMG6Q86US8 1419 aaKnown RBP16.68■□□□□ 0.26
PTPRF-208ENST00000437607 WASHC2AQ641Q2 1341 aa16.68■□□□□ 0.26
PTPRF-208ENST00000437607 GPR162Q16538 588 aa16.67■□□□□ 0.26
PTPRF-208ENST00000437607 COL23A1Q86Y22 540 aaPredicted RBP16.67■□□□□ 0.26
PTPRF-208ENST00000437607 KLHL34Q8N239 644 aa16.67■□□□□ 0.26
PTPRF-208ENST00000437607 FLT4P35916 1363 aa16.66■□□□□ 0.26
PTPRF-208ENST00000437607 NCAPD2Q15021 1401 aa16.66■□□□□ 0.26
PTPRF-208ENST00000437607 RAPGEF4Q8WZA2 1011 aa16.66■□□□□ 0.26
PTPRF-208ENST00000437607 CARD14Q9BXL6 1004 aa16.66■□□□□ 0.26
PTPRF-208ENST00000437607 KIF24Q5T7B8 1368 aa16.65■□□□□ 0.26
PTPRF-208ENST00000437607 TATP17735 454 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-208ENST00000437607 CYP27B1O15528 508 aa16.64■□□□□ 0.25
PTPRF-208ENST00000437607 PCDH11XQ9BZA7 1347 aa16.64■□□□□ 0.25
PTPRF-208ENST00000437607 PCDH11YQ9BZA8 1340 aa16.64■□□□□ 0.25
PTPRF-208ENST00000437607 NSD3Q9BZ95 1437 aa16.63■□□□□ 0.25
PTPRF-208ENST00000437607 EMILIN1Q9Y6C2 1016 aa16.63■□□□□ 0.25
PTPRF-208ENST00000437607 CEP350Q5VT06 3117 aa16.63■□□□□ 0.25
PTPRF-208ENST00000437607 PELP1Q8IZL8 1130 aaKnown RBP16.62■□□□□ 0.25
PTPRF-208ENST00000437607 PALLDQ8WX93 1383 aa16.62■□□□□ 0.25
PTPRF-208ENST00000437607 MSH5O43196 834 aa16.61■□□□□ 0.25
PTPRF-208ENST00000437607 YBX3P16989 372 aaKnown RBP eCLIP16.61■□□□□ 0.254e-11■□□□□ 8.5
PTPRF-208ENST00000437607 MSL1Q68DK7 614 aa16.61■□□□□ 0.25
PTPRF-208ENST00000437607 MPRIPQ6WCQ1 1025 aa16.61■□□□□ 0.25
PTPRF-208ENST00000437607 C1QTNF8P60827 252 aa16.6■□□□□ 0.25
PTPRF-208ENST00000437607 AMIGO3Q86WK7 504 aa16.6■□□□□ 0.25
PTPRF-208ENST00000437607 KIF13BQ9NQT8 1826 aa16.59■□□□□ 0.25
PTPRF-208ENST00000437607 DDX10Q13206 875 aaKnown RBP16.58■□□□□ 0.24
PTPRF-208ENST00000437607 COL5A3P25940 1745 aaPredicted RBP16.58■□□□□ 0.24
PTPRF-208ENST00000437607 KIAA1551Q9HCM1 1747 aa16.57■□□□□ 0.24
PTPRF-208ENST00000437607 NKX1-1Q15270 411 aaPredicted RBP16.57■□□□□ 0.24
PTPRF-208ENST00000437607 PIGBQ92521 554 aa16.57■□□□□ 0.24
PTPRF-208ENST00000437607 VIRMAQ69YN4 1812 aaKnown RBP16.56■□□□□ 0.24
PTPRF-208ENST00000437607 ZNF831Q5JPB2 1677 aa16.56■□□□□ 0.24
PTPRF-208ENST00000437607 DIEXFQ68CQ4 756 aaKnown RBP16.56■□□□□ 0.24
PTPRF-208ENST00000437607 SMIM5Q71RC9 77 aa16.56■□□□□ 0.24
PTPRF-208ENST00000437607 SENP3-EIF4A1A0A087X0R7 540 aa16.55■□□□□ 0.24
PTPRF-208ENST00000437607 N4BP2Q86UW6 1770 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-208ENST00000437607 MYH14Q7Z406 1995 aaKnown RBP16.55■□□□□ 0.24
PTPRF-208ENST00000437607 FLAD1Q8NFF5 587 aa16.54■□□□□ 0.24
PTPRF-208ENST00000437607 SMARCC1Q92922 1105 aaPredicted RBP16.54■□□□□ 0.24
PTPRF-208ENST00000437607 EYA1Q99502 592 aa16.54■□□□□ 0.24
PTPRF-208ENST00000437607 BRCA1P38398 1863 aaKnown RBP16.53■□□□□ 0.24
PTPRF-208ENST00000437607 PPM1GO15355 546 aaPredicted RBP16.53■□□□□ 0.24
PTPRF-208ENST00000437607 GRIN3BO60391 1043 aa16.53■□□□□ 0.24
PTPRF-208ENST00000437607 CD2APQ9Y5K6 639 aa16.53■□□□□ 0.24
PTPRF-208ENST00000437607 C4AP0C0L4 1744 aa16.53■□□□□ 0.24
PTPRF-208ENST00000437607 GIGYF1O75420 1035 aaPredicted RBP16.52■□□□□ 0.24
PTPRF-208ENST00000437607 LINC00116Q8NCU8 138 aa16.52■□□□□ 0.24
PTPRF-208ENST00000437607 AK7Q96M32 723 aa16.52■□□□□ 0.24
PTPRF-208ENST00000437607 POLKQ9UBT6 870 aa16.52■□□□□ 0.24
PTPRF-208ENST00000437607 SPG7Q9UQ90 795 aa16.52■□□□□ 0.24
PTPRF-208ENST00000437607 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms