RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 NGLY1Q96IV0 654 aa20.57■□□□□ 0.88
PHRF1-202ENST00000413872 MSH6P52701 1360 aa20.57■□□□□ 0.88
PHRF1-202ENST00000413872 TTC21AQ8NDW8 1320 aa20.57■□□□□ 0.88
PHRF1-202ENST00000413872 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.57■□□□□ 0.88
PHRF1-202ENST00000413872 HYPKQ9NX55 129 aa20.57■□□□□ 0.88
PHRF1-202ENST00000413872 KINO60870 393 aaKnown RBP20.57■□□□□ 0.88
PHRF1-202ENST00000413872 FMNL2Q96PY5 1086 aa20.57■□□□□ 0.88
PHRF1-202ENST00000413872 CDK5RAP3Q96JB5 506 aa20.56■□□□□ 0.88
PHRF1-202ENST00000413872 CCDC69A6NI79 296 aa20.56■□□□□ 0.88
PHRF1-202ENST00000413872 PDIA4P13667 645 aaKnown RBP20.56■□□□□ 0.88
PHRF1-202ENST00000413872 CDKL5O76039 1030 aa20.56■□□□□ 0.88
PHRF1-202ENST00000413872 DBF4Q9UBU7 674 aaPredicted RBP20.56■□□□□ 0.88
PHRF1-202ENST00000413872 ADAMTS2O95450 1211 aa20.55■□□□□ 0.88
PHRF1-202ENST00000413872 IFNL2Q8IZJ0 200 aa20.55■□□□□ 0.88
PHRF1-202ENST00000413872 RAI14Q9P0K7 980 aa20.55■□□□□ 0.88
PHRF1-202ENST00000413872 LRP2BPQ9P2M1 347 aa20.54■□□□□ 0.88
PHRF1-202ENST00000413872 IFIT1P09914 478 aaKnown RBP20.54■□□□□ 0.88
PHRF1-202ENST00000413872 PIP4K2AP48426 406 aaPredicted RBP20.54■□□□□ 0.88
PHRF1-202ENST00000413872 BLOC1S2Q6QNY1 142 aa20.54■□□□□ 0.88
PHRF1-202ENST00000413872 BICDL1Q6ZP65 573 aa20.54■□□□□ 0.88
PHRF1-202ENST00000413872 TMEM57Q8N5G2 664 aa20.54■□□□□ 0.88
PHRF1-202ENST00000413872 UGGT2Q9NYU1 1516 aa20.54■□□□□ 0.88
PHRF1-202ENST00000413872 METTL24Q5JXM2 366 aa20.54■□□□□ 0.88
PHRF1-202ENST00000413872 CCAR2Q8N163 923 aaKnown RBP20.54■□□□□ 0.88
PHRF1-202ENST00000413872 TMOD2Q9NZR1 351 aa20.54■□□□□ 0.88
PHRF1-202ENST00000413872 NUP153P49790 1475 aaKnown RBP20.54■□□□□ 0.88
PHRF1-202ENST00000413872 EPS15P42566 896 aa20.54■□□□□ 0.88
PHRF1-202ENST00000413872 RBM5P52756 815 aaKnown RBP eCLIP20.54■□□□□ 0.881e-6■■□□□ 13.2
PHRF1-202ENST00000413872 STK38Q15208 465 aa20.54■□□□□ 0.88
PHRF1-202ENST00000413872 ACEP12821 1306 aa20.54■□□□□ 0.88
PHRF1-202ENST00000413872 ABCC10Q5T3U5 1492 aa20.54■□□□□ 0.88
PHRF1-202ENST00000413872 GPS2Q13227 327 aa20.53■□□□□ 0.88
PHRF1-202ENST00000413872 ZSCAN31Q96LW9 406 aaPredicted RBP20.53■□□□□ 0.88
PHRF1-202ENST00000413872 TDO2P48775 406 aa20.53■□□□□ 0.88
PHRF1-202ENST00000413872 GLRX3O76003 335 aaKnown RBP20.53■□□□□ 0.88
PHRF1-202ENST00000413872 NUP160Q12769 1436 aa20.53■□□□□ 0.88
PHRF1-202ENST00000413872 SOGA3Q5TF21 947 aa20.53■□□□□ 0.88
PHRF1-202ENST00000413872 ATP2B2Q01814 1243 aa20.52■□□□□ 0.88
PHRF1-202ENST00000413872 THUMPD2Q9BTF0 503 aaKnown RBP20.52■□□□□ 0.88
PHRF1-202ENST00000413872 ZNF287Q9HBT7 754 aa20.52■□□□□ 0.88
PHRF1-202ENST00000413872 HOMER1Q86YM7 354 aa20.52■□□□□ 0.88
PHRF1-202ENST00000413872 UBAC1Q9BSL1 405 aa20.52■□□□□ 0.88
PHRF1-202ENST00000413872 USHBP1Q8N6Y0 703 aa20.52■□□□□ 0.88
PHRF1-202ENST00000413872 CAVIN4Q5BKX8 364 aa20.51■□□□□ 0.87
PHRF1-202ENST00000413872 MIS18AQ9NYP9 233 aa20.51■□□□□ 0.87
PHRF1-202ENST00000413872 NPHP3Q7Z494 1330 aa20.51■□□□□ 0.87
PHRF1-202ENST00000413872 ATP2B1P20020 1258 aa20.51■□□□□ 0.87
PHRF1-202ENST00000413872 PTPRCP08575 1304 aa20.51■□□□□ 0.87
PHRF1-202ENST00000413872 MPRIPQ6WCQ1 1025 aa20.51■□□□□ 0.87
PHRF1-202ENST00000413872 IL1RAPL2Q9NP60 686 aa20.51■□□□□ 0.87
PHRF1-202ENST00000413872 OFD1O75665 1012 aa20.5■□□□□ 0.87
PHRF1-202ENST00000413872 DNAAF4Q8WXU2 420 aa20.5■□□□□ 0.87
PHRF1-202ENST00000413872 NKTRP30414 1462 aaKnown RBP20.5■□□□□ 0.87
PHRF1-202ENST00000413872 MYD88Q99836 296 aa20.5■□□□□ 0.87
PHRF1-202ENST00000413872 WDR33Q9C0J8 1336 aaKnown RBP20.5■□□□□ 0.87
PHRF1-202ENST00000413872 RARSP54136 660 aaKnown RBP20.5■□□□□ 0.87
PHRF1-202ENST00000413872 DCTN1Q14203 1278 aa20.5■□□□□ 0.87
PHRF1-202ENST00000413872 NOL7Q9UMY1 257 aaKnown RBP20.5■□□□□ 0.87
PHRF1-202ENST00000413872 SSH1Q8WYL5 1049 aa20.49■□□□□ 0.87
PHRF1-202ENST00000413872 AIDAQ96BJ3 306 aa20.49■□□□□ 0.87
PHRF1-202ENST00000413872 CCDC184Q52MB2 194 aa20.49■□□□□ 0.87
PHRF1-202ENST00000413872 IFIT5Q13325 482 aaKnown RBP20.49■□□□□ 0.87
PHRF1-202ENST00000413872 SYCP2Q9BX26 1530 aa20.49■□□□□ 0.87
PHRF1-202ENST00000413872 ADAMTS12P58397 1594 aa20.49■□□□□ 0.87
PHRF1-202ENST00000413872 IDH1O75874 414 aaKnown RBP20.48■□□□□ 0.87
PHRF1-202ENST00000413872 ZSCAN29Q8IWY8 852 aaPredicted RBP20.48■□□□□ 0.87
PHRF1-202ENST00000413872 TOM1O60784 492 aa20.48■□□□□ 0.87
PHRF1-202ENST00000413872 CT47A1Q5JQC4 288 aaPredicted RBP20.48■□□□□ 0.87
PHRF1-202ENST00000413872 IMMTQ16891 758 aaKnown RBP20.48■□□□□ 0.87
PHRF1-202ENST00000413872 CNKSR2Q8WXI2 1034 aa20.48■□□□□ 0.87
PHRF1-202ENST00000413872 RIMS2Q9UQ26 1411 aa20.48■□□□□ 0.87
PHRF1-202ENST00000413872 IL16Q14005 1332 aa20.48■□□□□ 0.87
PHRF1-202ENST00000413872 WWC2Q6AWC2 1192 aa20.47■□□□□ 0.87
PHRF1-202ENST00000413872 WASF1Q92558 559 aa20.47■□□□□ 0.87
PHRF1-202ENST00000413872 FILIP1LQ4L180 1135 aa20.47■□□□□ 0.87
PHRF1-202ENST00000413872 PUS7Q96PZ0 661 aaKnown RBP20.47■□□□□ 0.87
PHRF1-202ENST00000413872 ANKRD24Q8TF21 1146 aa20.47■□□□□ 0.87
PHRF1-202ENST00000413872 K7ELQ4 463 aaPredicted RBP20.46■□□□□ 0.87
PHRF1-202ENST00000413872 KRT18P05783 430 aaKnown RBP20.46■□□□□ 0.87
PHRF1-202ENST00000413872 KIAA0556O60303 1618 aa20.46■□□□□ 0.87
PHRF1-202ENST00000413872 TRMT112Q9UI30 125 aaKnown RBP20.46■□□□□ 0.87
PHRF1-202ENST00000413872 MX1P20591 662 aa20.46■□□□□ 0.87
PHRF1-202ENST00000413872 EXOC6BQ9Y2D4 811 aa20.46■□□□□ 0.87
PHRF1-202ENST00000413872 CWC27Q6UX04 472 aaKnown RBP20.45■□□□□ 0.86
PHRF1-202ENST00000413872 NUP133Q8WUM0 1156 aa20.45■□□□□ 0.86
PHRF1-202ENST00000413872 PDRG1Q9NUG6 133 aa20.45■□□□□ 0.86
PHRF1-202ENST00000413872 MAP4K4O95819 1239 aaPredicted RBP20.45■□□□□ 0.86
PHRF1-202ENST00000413872 ZNF592Q92610 1267 aa20.45■□□□□ 0.86
PHRF1-202ENST00000413872 C11orf95C9JLR9 678 aaPredicted RBP20.45■□□□□ 0.86
PHRF1-202ENST00000413872 ABCF2Q9UG63 623 aa20.45■□□□□ 0.86
PHRF1-202ENST00000413872 U3KPZ7 1027 aaPredicted RBP20.45■□□□□ 0.86
PHRF1-202ENST00000413872 KRT85P78386 507 aa20.44■□□□□ 0.86
PHRF1-202ENST00000413872 ODF2Q5BJF6 829 aa20.44■□□□□ 0.86
PHRF1-202ENST00000413872 CCDC85AQ96PX6 553 aaPredicted RBP20.44■□□□□ 0.86
PHRF1-202ENST00000413872 MAGEC2Q9UBF1 373 aaPredicted RBP20.44■□□□□ 0.86
PHRF1-202ENST00000413872 A0A087WZG4 1122 aa20.44■□□□□ 0.86
PHRF1-202ENST00000413872 ANKRD18BA2A2Z9 1011 aa20.44■□□□□ 0.86
PHRF1-202ENST00000413872 KDM4AO75164 1064 aa20.44■□□□□ 0.86
PHRF1-202ENST00000413872 SLC5A1P13866 664 aa20.44■□□□□ 0.86
PHRF1-202ENST00000413872 CTTNBP2Q8WZ74 1663 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms