RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 CNTNAP3Q9BZ76 1288 aa9.56□□□□□ -0.88
CLK1-203ENST00000409769 ERVK-9P63128 1117 aa9.55□□□□□ -0.88
CLK1-203ENST00000409769 GMCL1Q96IK5 515 aa9.55□□□□□ -0.88
CLK1-203ENST00000409769 CDC14CA4D256 554 aa9.54□□□□□ -0.88
CLK1-203ENST00000409769 KRT76Q01546 638 aa9.54□□□□□ -0.88
CLK1-203ENST00000409769 SENP3-EIF4A1A0A087X0R7 540 aa9.53□□□□□ -0.88
CLK1-203ENST00000409769 CYP2U1Q7Z449 544 aa9.53□□□□□ -0.88
CLK1-203ENST00000409769 RNF225M0QZC1 329 aaPredicted RBP9.52□□□□□ -0.89
CLK1-203ENST00000409769 VWA5B2Q8N398 1253 aa9.52□□□□□ -0.89
CLK1-203ENST00000409769 MTMR14Q8NCE2 650 aa9.52□□□□□ -0.89
CLK1-203ENST00000409769 ESF1Q9H501 851 aaKnown RBP9.52□□□□□ -0.89
CLK1-203ENST00000409769 PRM3Q9NNZ6 103 aa9.52□□□□□ -0.89
CLK1-203ENST00000409769 SLURP2P0DP57 97 aa9.5□□□□□ -0.89
CLK1-203ENST00000409769 KCNMA1Q12791 1236 aa9.5□□□□□ -0.89
CLK1-203ENST00000409769 A0A1W2PRU2 124 aa9.49□□□□□ -0.89
CLK1-203ENST00000409769 NLRP3Q96P20 1036 aa9.49□□□□□ -0.89
CLK1-203ENST00000409769 MEN1O00255 615 aa9.48□□□□□ -0.89
CLK1-203ENST00000409769 CLN3Q13286 438 aa9.48□□□□□ -0.89
CLK1-203ENST00000409769 RNFT1Q5M7Z0 435 aa9.48□□□□□ -0.89
CLK1-203ENST00000409769 PRICKLE2Q7Z3G6 844 aa9.48□□□□□ -0.89
CLK1-203ENST00000409769 PCDHB11Q9Y5F2 797 aa9.48□□□□□ -0.89
CLK1-203ENST00000409769 GPR37L1O60883 481 aa9.47□□□□□ -0.89
CLK1-203ENST00000409769 WDR44Q5JSH3 913 aa9.47□□□□□ -0.89
CLK1-203ENST00000409769 FOXR1Q6PIV2 292 aa9.47□□□□□ -0.89
CLK1-203ENST00000409769 SVOPQ8N4V2 548 aa9.47□□□□□ -0.89
CLK1-203ENST00000409769 DYRK1BQ9Y463 629 aa9.47□□□□□ -0.89
CLK1-203ENST00000409769 H7C1W4 665 aa9.46□□□□□ -0.9
CLK1-203ENST00000409769 SRSF11Q05519 484 aaKnown RBP9.46□□□□□ -0.9
CLK1-203ENST00000409769 SLC27A3Q5K4L6 730 aa9.46□□□□□ -0.9
CLK1-203ENST00000409769 TRIM22Q8IYM9 498 aa9.46□□□□□ -0.9
CLK1-203ENST00000409769 TRAK2O60296 914 aa9.45□□□□□ -0.9
CLK1-203ENST00000409769 GNRH1P01148 92 aa9.45□□□□□ -0.9
CLK1-203ENST00000409769 ZNF385CQ66K41 422 aaPredicted RBP9.45□□□□□ -0.9
CLK1-203ENST00000409769 SNRKQ9NRH2 765 aa9.45□□□□□ -0.9
CLK1-203ENST00000409769 ADAMTS8Q9UP79 889 aa9.45□□□□□ -0.9
CLK1-203ENST00000409769 SPATA31C2B4DYI2 1134 aa9.44□□□□□ -0.9
CLK1-203ENST00000409769 MYCP01106 439 aaPredicted RBP9.44□□□□□ -0.9
CLK1-203ENST00000409769 GRIP2Q9C0E4 1043 aa9.44□□□□□ -0.9
CLK1-203ENST00000409769 OSBPL3Q9H4L5 887 aa9.44□□□□□ -0.9
CLK1-203ENST00000409769 RHOQP17081 205 aa9.43□□□□□ -0.9
CLK1-203ENST00000409769 EIF4G2P78344 907 aaKnown RBP eCLIP9.43□□□□□ -0.9
CLK1-203ENST00000409769 ADAMTS2O95450 1211 aa9.42□□□□□ -0.9
CLK1-203ENST00000409769 SCTRP47872 440 aa9.42□□□□□ -0.9
CLK1-203ENST00000409769 ZNF837Q96EG3 531 aaPredicted RBP9.42□□□□□ -0.9
CLK1-203ENST00000409769 CEP126Q9P2H0 1117 aa9.42□□□□□ -0.9
CLK1-203ENST00000409769 MAP3K10Q02779 954 aa9.41□□□□□ -0.9
CLK1-203ENST00000409769 TMEM132AQ24JP5 1023 aa9.41□□□□□ -0.9
CLK1-203ENST00000409769 TAS1R3Q7RTX0 852 aa9.41□□□□□ -0.9
CLK1-203ENST00000409769 ARHGEF10LQ9HCE6 1279 aa9.41□□□□□ -0.9
CLK1-203ENST00000409769 MBIPQ9NS73 344 aa9.41□□□□□ -0.9
CLK1-203ENST00000409769 ARHGEF15O94989 841 aa9.4□□□□□ -0.9
CLK1-203ENST00000409769 POU4F2Q12837 409 aa9.4□□□□□ -0.9
CLK1-203ENST00000409769 NBPF10Q6P3W6 841 aaKnown RBP9.4□□□□□ -0.9
CLK1-203ENST00000409769 RIPOR1Q6ZS17 1223 aa9.4□□□□□ -0.9
CLK1-203ENST00000409769 NBPF15Q8N660 670 aa9.4□□□□□ -0.9
CLK1-203ENST00000409769 TRERF1Q96PN7 1200 aa9.4□□□□□ -0.9
CLK1-203ENST00000409769 ESYT1Q9BSJ8 1104 aa9.4□□□□□ -0.9
CLK1-203ENST00000409769 ENAMQ9NRM1 1142 aa9.4□□□□□ -0.9
CLK1-203ENST00000409769 CUEDC1Q9NWM3 386 aaPredicted RBP9.4□□□□□ -0.9
CLK1-203ENST00000409769 WASLO00401 505 aaPredicted RBP9.39□□□□□ -0.91
CLK1-203ENST00000409769 ESCO1Q5FWF5 840 aa9.39□□□□□ -0.91
CLK1-203ENST00000409769 TMEM151AQ8N4L1 468 aa9.39□□□□□ -0.91
CLK1-203ENST00000409769 SIRT1Q96EB6 747 aa9.39□□□□□ -0.91
CLK1-203ENST00000409769 GTF2E1P29083 439 aaPredicted RBP9.38□□□□□ -0.91
CLK1-203ENST00000409769 MARSP56192 900 aaKnown RBP9.38□□□□□ -0.91
CLK1-203ENST00000409769 USP4Q13107 963 aa9.38□□□□□ -0.91
CLK1-203ENST00000409769 GAS6Q14393 721 aa9.38□□□□□ -0.91
CLK1-203ENST00000409769 CNKSR1Q969H4 720 aa9.38□□□□□ -0.91
CLK1-203ENST00000409769 SCARF2Q96GP6 870 aaPredicted RBP9.38□□□□□ -0.91
CLK1-203ENST00000409769 GAS2L1Q99501 681 aaPredicted RBP9.38□□□□□ -0.91
CLK1-203ENST00000409769 TIMMDC1Q9NPL8 285 aa9.38□□□□□ -0.91
CLK1-203ENST00000409769 TBC1D2BQ9UPU7 963 aa9.38□□□□□ -0.91
CLK1-203ENST00000409769 F11P03951 625 aa9.37□□□□□ -0.91
CLK1-203ENST00000409769 GSK3AP49840 483 aa9.37□□□□□ -0.91
CLK1-203ENST00000409769 RASSF7Q02833 373 aa9.37□□□□□ -0.91
CLK1-203ENST00000409769 DBN1Q16643 649 aa9.37□□□□□ -0.91
CLK1-203ENST00000409769 KANK3Q6NY19 840 aa9.37□□□□□ -0.91
CLK1-203ENST00000409769 WHAMMQ8TF30 809 aa9.37□□□□□ -0.91
CLK1-203ENST00000409769 NSFL1CQ9UNZ2 370 aaKnown RBP9.37□□□□□ -0.91
CLK1-203ENST00000409769 GDF11O95390 407 aa9.36□□□□□ -0.91
CLK1-203ENST00000409769 SLFNL1Q499Z3 407 aa9.36□□□□□ -0.91
CLK1-203ENST00000409769 CCDC85AQ96PX6 553 aaPredicted RBP9.36□□□□□ -0.91
CLK1-203ENST00000409769 CENPCQ03188 943 aa9.35□□□□□ -0.91
CLK1-203ENST00000409769 LBRQ14739 615 aaKnown RBP9.35□□□□□ -0.91
CLK1-203ENST00000409769 WASHC4Q2M389 1173 aa9.35□□□□□ -0.91
CLK1-203ENST00000409769 LYPD4Q6UWN0 246 aa9.35□□□□□ -0.91
CLK1-203ENST00000409769 XAGE2Q96GT9 111 aa9.35□□□□□ -0.91
CLK1-203ENST00000409769 ZSCAN10Q96SZ4 725 aaPredicted RBP9.35□□□□□ -0.91
CLK1-203ENST00000409769 LRRC4BQ9NT99 713 aa9.35□□□□□ -0.91
CLK1-203ENST00000409769 DOLKQ9UPQ8 538 aa9.35□□□□□ -0.91
CLK1-203ENST00000409769 A0A1B0GTH6 734 aa9.34□□□□□ -0.91
CLK1-203ENST00000409769 IL2RAP01589 272 aa9.34□□□□□ -0.91
CLK1-203ENST00000409769 CELA2BP08218 269 aaPredicted RBP9.34□□□□□ -0.91
CLK1-203ENST00000409769 GNASQ5JWF2 1037 aa9.34□□□□□ -0.91
CLK1-203ENST00000409769 NUCKS1Q9H1E3 243 aaKnown RBP9.34□□□□□ -0.91
CLK1-203ENST00000409769 RAB6BQ9NRW1 208 aa9.34□□□□□ -0.91
CLK1-203ENST00000409769 HRH3Q9Y5N1 445 aa9.34□□□□□ -0.91
CLK1-203ENST00000409769 SOX11P35716 441 aa9.33□□□□□ -0.92
CLK1-203ENST00000409769 RNF135Q8IUD6 432 aa9.33□□□□□ -0.92
CLK1-203ENST00000409769 PHTF2Q8N3S3 785 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms