RNA–Protein interactions for RNA: ENST00000360046.9

HOXA4-201, Transcript of homeobox A4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA4, Length 1,747 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4-201ENST00000360046 NRAPQ86VF7 1730 aa28.63■■■□□ 2.17
HOXA4-201ENST00000360046 UNC5CLQ8IV45 518 aa28.63■■■□□ 2.17
HOXA4-201ENST00000360046 CCDC9Q9Y3X0 531 aaKnown RBP28.63■■■□□ 2.17
HOXA4-201ENST00000360046 WDR63Q8IWG1 891 aa28.62■■■□□ 2.17
HOXA4-201ENST00000360046 FNBP4Q8N3X1 1017 aaPredicted RBP28.62■■■□□ 2.17
HOXA4-201ENST00000360046 TATP17735 454 aaPredicted RBP28.61■■■□□ 2.17
HOXA4-201ENST00000360046 PLEKHO1Q53GL0 409 aaPredicted RBP28.61■■■□□ 2.17
HOXA4-201ENST00000360046 USP21Q9UK80 565 aa28.61■■■□□ 2.17
HOXA4-201ENST00000360046 MEGF6O75095 1541 aa28.61■■■□□ 2.17
HOXA4-201ENST00000360046 AMOTQ4VCS5 1084 aa28.6■■■□□ 2.17
HOXA4-201ENST00000360046 PARP4Q9UKK3 1724 aaKnown RBP28.59■■■□□ 2.17
HOXA4-201ENST00000360046 E9PSI1 815 aa28.58■■■□□ 2.17
HOXA4-201ENST00000360046 SPINK5Q9NQ38 1064 aaPredicted RBP28.58■■■□□ 2.17
HOXA4-201ENST00000360046 SLFN5Q08AF3 891 aa28.57■■■□□ 2.16
HOXA4-201ENST00000360046 THUMPD2Q9BTF0 503 aaKnown RBP28.57■■■□□ 2.16
HOXA4-201ENST00000360046 AFF2P51816 1311 aa28.57■■■□□ 2.16
HOXA4-201ENST00000360046 ZNF530Q6P9A1 599 aaPredicted RBP28.57■■■□□ 2.16
HOXA4-201ENST00000360046 RTF1Q92541 710 aaKnown RBP28.57■■■□□ 2.16
HOXA4-201ENST00000360046 MAP3K5Q99683 1374 aa28.57■■■□□ 2.16
HOXA4-201ENST00000360046 BCL9LQ86UU0 1499 aa28.57■■■□□ 2.16
HOXA4-201ENST00000360046 DCTN1Q14203 1278 aa28.56■■■□□ 2.16
HOXA4-201ENST00000360046 GNAT3A8MTJ3 354 aa28.55■■■□□ 2.16
HOXA4-201ENST00000360046 IL2RBP14784 551 aa28.55■■■□□ 2.16
HOXA4-201ENST00000360046 CALD1Q05682 793 aaKnown RBP28.55■■■□□ 2.16
HOXA4-201ENST00000360046 MCM10Q7L590 875 aa28.55■■■□□ 2.16
HOXA4-201ENST00000360046 PLEKHG2Q9H7P9 1386 aa28.54■■■□□ 2.16
HOXA4-201ENST00000360046 SPATA31A1Q5TZJ5 1347 aa28.53■■■□□ 2.16
HOXA4-201ENST00000360046 PKD1L3Q7Z443 1732 aa28.53■■■□□ 2.16
HOXA4-201ENST00000360046 SPG7Q9UQ90 795 aa28.53■■■□□ 2.16
HOXA4-201ENST00000360046 OVOS2A0A0G2JMS6 1433 aa28.53■■■□□ 2.16
HOXA4-201ENST00000360046 IL16Q14005 1332 aa28.53■■■□□ 2.16
HOXA4-201ENST00000360046 SPATA31A5Q5VU36 1347 aa28.53■■■□□ 2.16
HOXA4-201ENST00000360046 SPATA31A7Q8IWB4 1347 aa28.53■■■□□ 2.16
HOXA4-201ENST00000360046 VPS72Q15906 364 aa28.52■■■□□ 2.16
HOXA4-201ENST00000360046 C1orf141Q5JVX7 400 aa28.52■■■□□ 2.16
HOXA4-201ENST00000360046 DUSP27Q5VZP5 1158 aa28.52■■■□□ 2.16
HOXA4-201ENST00000360046 HTATSF1O43719 755 aaKnown RBP28.51■■■□□ 2.15
HOXA4-201ENST00000360046 MYH16Q9H6N6 1097 aa28.51■■■□□ 2.15
HOXA4-201ENST00000360046 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.51■■■□□ 2.15
HOXA4-201ENST00000360046 AKAP4Q5JQC9 854 aa28.5■■■□□ 2.15
HOXA4-201ENST00000360046 TRMT2AQ8IZ69 625 aaKnown RBP28.5■■■□□ 2.15
HOXA4-201ENST00000360046 LAS1LQ9Y4W2 734 aaKnown RBP28.49■■■□□ 2.15
HOXA4-201ENST00000360046 THRAP3Q9Y2W1 955 aaKnown RBP28.49■■■□□ 2.15
HOXA4-201ENST00000360046 WNK3Q9BYP7 1800 aa28.48■■■□□ 2.15
HOXA4-201ENST00000360046 ZCRB1Q8TBF4 217 aaKnown RBP28.46■■■□□ 2.15
HOXA4-201ENST00000360046 LRRC37A3O60309 1634 aa28.46■■■□□ 2.15
HOXA4-201ENST00000360046 VIRMAQ69YN4 1812 aaKnown RBP28.46■■■□□ 2.15
HOXA4-201ENST00000360046 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.46■■■□□ 2.15
HOXA4-201ENST00000360046 TSR2Q969E8 191 aaKnown RBP28.46■■■□□ 2.15
HOXA4-201ENST00000360046 FANCIQ9NVI1 1328 aa28.45■■■□□ 2.14
HOXA4-201ENST00000360046 GNAI1P63096 354 aa28.45■■■□□ 2.14
HOXA4-201ENST00000360046 IFT57Q9NWB7 429 aa28.45■■■□□ 2.14
HOXA4-201ENST00000360046 TRPC5Q9UL62 973 aaPredicted RBP28.45■■■□□ 2.14
HOXA4-201ENST00000360046 IL17REQ8NFR9 667 aa28.44■■■□□ 2.14
HOXA4-201ENST00000360046 MPRIPQ6WCQ1 1025 aa28.43■■■□□ 2.14
HOXA4-201ENST00000360046 DISP2A7MBM2 1401 aa28.43■■■□□ 2.14
HOXA4-201ENST00000360046 PCDH11XQ9BZA7 1347 aa28.43■■■□□ 2.14
HOXA4-201ENST00000360046 PCDH11YQ9BZA8 1340 aa28.43■■■□□ 2.14
HOXA4-201ENST00000360046 PHKG2P15735 406 aa28.43■■■□□ 2.14
HOXA4-201ENST00000360046 FAM98CQ17RN3 349 aaKnown RBP28.43■■■□□ 2.14
HOXA4-201ENST00000360046 IFNL2Q8IZJ0 200 aa28.43■■■□□ 2.14
HOXA4-201ENST00000360046 CDCA7Q9BWT1 371 aaPredicted RBP28.43■■■□□ 2.14
HOXA4-201ENST00000360046 QTRT2Q9H974 415 aaKnown RBP28.43■■■□□ 2.14
HOXA4-201ENST00000360046 BARGINQ6ZT62 677 aa28.42■■■□□ 2.14
HOXA4-201ENST00000360046 CFAP44Q96MT7 982 aa28.42■■■□□ 2.14
HOXA4-201ENST00000360046 SHANK3Q9BYB0 1731 aa28.41■■■□□ 2.14
HOXA4-201ENST00000360046 DDX54Q8TDD1 881 aaKnown RBP28.41■■■□□ 2.14
HOXA4-201ENST00000360046 GJD4Q96KN9 370 aaPredicted RBP28.41■■■□□ 2.14
HOXA4-201ENST00000360046 EXOC5O00471 708 aa28.4■■■□□ 2.14
HOXA4-201ENST00000360046 CYP27B1O15528 508 aa28.4■■■□□ 2.14
HOXA4-201ENST00000360046 LGR6Q9HBX8 967 aa28.4■■■□□ 2.14
HOXA4-201ENST00000360046 A0A0G2JS52 829 aa28.4■■■□□ 2.14
HOXA4-201ENST00000360046 ZNF853P0CG23 659 aa28.4■■■□□ 2.14
HOXA4-201ENST00000360046 MYT1Q01538 1121 aa28.4■■■□□ 2.14
HOXA4-201ENST00000360046 CEMIPQ8WUJ3 1361 aa28.4■■■□□ 2.14
HOXA4-201ENST00000360046 ATRNO75882 1429 aa28.38■■■□□ 2.13
HOXA4-201ENST00000360046 RNMTO43148 476 aaKnown RBP28.38■■■□□ 2.13
HOXA4-201ENST00000360046 ZNF772Q68DY9 489 aaPredicted RBP28.38■■■□□ 2.13
HOXA4-201ENST00000360046 MBIPQ9NS73 344 aa28.38■■■□□ 2.13
HOXA4-201ENST00000360046 SCN11AQ9UI33 1791 aa28.38■■■□□ 2.13
HOXA4-201ENST00000360046 ADAMTS7Q9UKP4 1686 aa28.37■■■□□ 2.13
HOXA4-201ENST00000360046 RCAN3Q9UKA8 241 aa28.37■■■□□ 2.13
HOXA4-201ENST00000360046 TEFQ10587 303 aa28.36■■■□□ 2.13
HOXA4-201ENST00000360046 DDB1Q16531 1140 aa28.36■■■□□ 2.13
HOXA4-201ENST00000360046 HSP90AB1P08238 724 aaKnown RBP28.35■■■□□ 2.13
HOXA4-201ENST00000360046 SUPT16HQ9Y5B9 1047 aaKnown RBP28.35■■■□□ 2.13
HOXA4-201ENST00000360046 KDM6AO15550 1401 aaPredicted RBP28.35■■■□□ 2.13
HOXA4-201ENST00000360046 CHL1O00533 1208 aa28.35■■■□□ 2.13
HOXA4-201ENST00000360046 EXOSC9Q06265 439 aaKnown RBP28.35■■■□□ 2.13
HOXA4-201ENST00000360046 DCAF5Q96JK2 942 aa28.34■■■□□ 2.13
HOXA4-201ENST00000360046 MIS18AQ9NYP9 233 aa28.34■■■□□ 2.13
HOXA4-201ENST00000360046 TSPYL4Q9UJ04 414 aa28.34■■■□□ 2.13
HOXA4-201ENST00000360046 TAF7Q15545 349 aaPredicted RBP28.33■■■□□ 2.13
HOXA4-201ENST00000360046 TNS2Q63HR2 1409 aa28.32■■■□□ 2.12
HOXA4-201ENST00000360046 GLI3P10071 1580 aa28.32■■■□□ 2.12
HOXA4-201ENST00000360046 SIPA1L3O60292 1781 aaPredicted RBP28.3■■■□□ 2.12
HOXA4-201ENST00000360046 BABAM1Q9NWV8 329 aa28.27■■■□□ 2.12
HOXA4-201ENST00000360046 NKX1-1Q15270 411 aaPredicted RBP28.26■■■□□ 2.12
HOXA4-201ENST00000360046 SLC52A2Q9HAB3 445 aa28.26■■■□□ 2.12
HOXA4-201ENST00000360046 KDM3BQ7LBC6 1761 aa28.26■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms