RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 LRRCC1Q9C099 1032 aa10.01□□□□□ -0.81
HPS4-201ENST00000336873 LRRC59Q96AG4 307 aaKnown RBP10.01□□□□□ -0.81
HPS4-201ENST00000336873 PHAXQ9H814 394 aaKnown RBP10.01□□□□□ -0.81
HPS4-201ENST00000336873 ABCC1P33527 1531 aa10.01□□□□□ -0.81
HPS4-201ENST00000336873 UNC13BO14795 1591 aa10.01□□□□□ -0.81
HPS4-201ENST00000336873 STK11IPQ8N1F8 1099 aa10.01□□□□□ -0.81
HPS4-201ENST00000336873 FAM43AQ8N2R8 423 aa10□□□□□ -0.81
HPS4-201ENST00000336873 NEUROD6Q96NK8 337 aa10□□□□□ -0.81
HPS4-201ENST00000336873 PLEKHF1Q96S99 279 aa10□□□□□ -0.81
HPS4-201ENST00000336873 INSRP06213 1382 aa10□□□□□ -0.81
HPS4-201ENST00000336873 CEP152O94986 1710 aa10□□□□□ -0.81
HPS4-201ENST00000336873 MAST1Q9Y2H9 1570 aa10□□□□□ -0.81
HPS4-201ENST00000336873 ERC2O15083 957 aa10□□□□□ -0.81
HPS4-201ENST00000336873 FLIIQ13045 1269 aa10□□□□□ -0.81
HPS4-201ENST00000336873 ALDH1L2Q3SY69 923 aa10□□□□□ -0.81
HPS4-201ENST00000336873 BMP2KLQ5H9B9 411 aa10□□□□□ -0.81
HPS4-201ENST00000336873 CCDC30Q5VVM6 783 aa10□□□□□ -0.81
HPS4-201ENST00000336873 ZNF530Q6P9A1 599 aaPredicted RBP10□□□□□ -0.81
HPS4-201ENST00000336873 CT47B1P0C2W7 299 aaPredicted RBP10□□□□□ -0.81
HPS4-201ENST00000336873 RIC3Q7Z5B4 369 aa10□□□□□ -0.81
HPS4-201ENST00000336873 PPP6R1Q9UPN7 881 aa10□□□□□ -0.81
HPS4-201ENST00000336873 FAM177BA6PVY3 158 aa9.99□□□□□ -0.81
HPS4-201ENST00000336873 PLEKHM2Q8IWE5 1019 aa9.99□□□□□ -0.81
HPS4-201ENST00000336873 THEMISQ8N1K5 641 aaPredicted RBP9.99□□□□□ -0.81
HPS4-201ENST00000336873 CCDC8Q9H0W5 538 aaPredicted RBP9.99□□□□□ -0.81
HPS4-201ENST00000336873 MADDQ8WXG6 1647 aa9.99□□□□□ -0.81
HPS4-201ENST00000336873 PI4KAP2A4QPH2 592 aa9.99□□□□□ -0.81
HPS4-201ENST00000336873 AAMPQ13685 434 aa9.99□□□□□ -0.81
HPS4-201ENST00000336873 PI4KAP1Q8N8J0 262 aa9.99□□□□□ -0.81
HPS4-201ENST00000336873 ZNF692Q9BU19 519 aaPredicted RBP9.99□□□□□ -0.81
HPS4-201ENST00000336873 YEATS2Q9ULM3 1422 aa9.99□□□□□ -0.81
HPS4-201ENST00000336873 ESPNB1AK53 854 aa9.99□□□□□ -0.81
HPS4-201ENST00000336873 SIRT2Q8IXJ6 389 aa9.99□□□□□ -0.81
HPS4-201ENST00000336873 DNAJC2Q99543 621 aaKnown RBP9.99□□□□□ -0.81
HPS4-201ENST00000336873 IL13P35225 146 aa9.98□□□□□ -0.81
HPS4-201ENST00000336873 RABEP1Q15276 862 aa9.98□□□□□ -0.81
HPS4-201ENST00000336873 SYTL4Q96C24 671 aaPredicted RBP9.98□□□□□ -0.81
HPS4-201ENST00000336873 PA2G4Q9UQ80 394 aaKnown RBP9.98□□□□□ -0.81
HPS4-201ENST00000336873 PPIP5K1Q6PFW1 1433 aa9.98□□□□□ -0.81
HPS4-201ENST00000336873 SLC39A6Q13433 755 aa9.98□□□□□ -0.81
HPS4-201ENST00000336873 NEO1Q92859 1461 aa9.98□□□□□ -0.81
HPS4-201ENST00000336873 BAG4O95429 457 aaKnown RBP9.98□□□□□ -0.81
HPS4-201ENST00000336873 GSPT1P15170 499 aaKnown RBP9.98□□□□□ -0.81
HPS4-201ENST00000336873 MX1P20591 662 aa9.98□□□□□ -0.81
HPS4-201ENST00000336873 NUCB2P80303 420 aa9.98□□□□□ -0.81
HPS4-201ENST00000336873 GORABQ5T7V8 394 aa9.98□□□□□ -0.81
HPS4-201ENST00000336873 SPC24Q8NBT2 197 aa9.98□□□□□ -0.81
HPS4-201ENST00000336873 EYA1Q99502 592 aa9.98□□□□□ -0.81
HPS4-201ENST00000336873 NINLQ9Y2I6 1382 aa9.97□□□□□ -0.81
HPS4-201ENST00000336873 SRCIN1Q9C0H9 1055 aa9.97□□□□□ -0.81
HPS4-201ENST00000336873 BOLA2Q9H3K6 86 aa9.97□□□□□ -0.81
HPS4-201ENST00000336873 TTC21BQ7Z4L5 1316 aa9.97□□□□□ -0.81
HPS4-201ENST00000336873 PNMA6EA0A0J9YXQ4 647 aa9.97□□□□□ -0.81
HPS4-201ENST00000336873 TTC22Q5TAA0 569 aa9.97□□□□□ -0.81
HPS4-201ENST00000336873 CHMP4CQ96CF2 233 aa9.97□□□□□ -0.81
HPS4-201ENST00000336873 SMC3Q9UQE7 1217 aa9.97□□□□□ -0.81
HPS4-201ENST00000336873 GNAT3A8MTJ3 354 aa9.97□□□□□ -0.81
HPS4-201ENST00000336873 GNAI3P08754 354 aa9.97□□□□□ -0.81
HPS4-201ENST00000336873 SKOR2Q2VWA4 1001 aaPredicted RBP9.97□□□□□ -0.81
HPS4-201ENST00000336873 CEP85Q6P2H3 762 aa9.97□□□□□ -0.81
HPS4-201ENST00000336873 GAS2L3Q86XJ1 694 aa9.97□□□□□ -0.81
HPS4-201ENST00000336873 RPAP2Q8IXW5 612 aaPredicted RBP9.97□□□□□ -0.81
HPS4-201ENST00000336873 ZNF830Q96NB3 372 aaPredicted RBP9.97□□□□□ -0.81
HPS4-201ENST00000336873 NDUFB9Q9Y6M9 179 aa9.97□□□□□ -0.81
HPS4-201ENST00000336873 MAP3K19Q56UN5 1328 aa9.96□□□□□ -0.81
HPS4-201ENST00000336873 BTBD11A6QL63 1104 aa9.96□□□□□ -0.81
HPS4-201ENST00000336873 PPP1R42Q7Z4L9 355 aa9.96□□□□□ -0.81
HPS4-201ENST00000336873 CLASRPQ8N2M8 674 aaKnown RBP9.96□□□□□ -0.81
HPS4-201ENST00000336873 IQGAP3Q86VI3 1631 aa9.96□□□□□ -0.81
HPS4-201ENST00000336873 G3BP1Q13283 466 aaKnown RBP eCLIP9.96□□□□□ -0.81
HPS4-201ENST00000336873 KLHDC4Q8TBB5 520 aa9.96□□□□□ -0.81
HPS4-201ENST00000336873 YTHDC2Q9H6S0 1430 aaKnown RBP9.96□□□□□ -0.82
HPS4-201ENST00000336873 PTCD1O75127 700 aaKnown RBP9.96□□□□□ -0.82
HPS4-201ENST00000336873 CAMK4Q16566 473 aa9.96□□□□□ -0.82
HPS4-201ENST00000336873 FSD1Q9BTV5 496 aa9.96□□□□□ -0.82
HPS4-201ENST00000336873 SHROOM2Q13796 1616 aa9.95□□□□□ -0.82
HPS4-201ENST00000336873 PDE1AP54750 535 aa9.95□□□□□ -0.82
HPS4-201ENST00000336873 CWF19L2Q2TBE0 894 aaKnown RBP9.95□□□□□ -0.82
HPS4-201ENST00000336873 CCDC83Q8IWF9 413 aa9.95□□□□□ -0.82
HPS4-201ENST00000336873 CABLES1Q8TDN4 633 aa9.95□□□□□ -0.82
HPS4-201ENST00000336873 CHPF2Q9P2E5 772 aa9.95□□□□□ -0.82
HPS4-201ENST00000336873 AACSQ86V21 672 aa9.95□□□□□ -0.82
HPS4-201ENST00000336873 ATP5J2-PTCD1G3V325 749 aa9.95□□□□□ -0.82
HPS4-201ENST00000336873 CASTP20810 708 aaKnown RBP9.95□□□□□ -0.82
HPS4-201ENST00000336873 ZRSR1Q15695 479 aaKnown RBP9.95□□□□□ -0.82
HPS4-201ENST00000336873 CHRNA2Q15822 529 aa9.95□□□□□ -0.82
HPS4-201ENST00000336873 PRPF40BQ6NWY9 871 aaKnown RBP9.95□□□□□ -0.82
HPS4-201ENST00000336873 DDX11Q96FC9 970 aa9.95□□□□□ -0.82
HPS4-201ENST00000336873 ANTXR1Q9H6X2 564 aa9.95□□□□□ -0.82
HPS4-201ENST00000336873 LGR6Q9HBX8 967 aa9.95□□□□□ -0.82
HPS4-201ENST00000336873 TOMM22Q9NS69 142 aa9.95□□□□□ -0.82
HPS4-201ENST00000336873 ABCC11Q96J66 1382 aa9.94□□□□□ -0.82
HPS4-201ENST00000336873 KCNQ3O43525 872 aa9.94□□□□□ -0.82
HPS4-201ENST00000336873 LTKP29376 864 aa9.94□□□□□ -0.82
HPS4-201ENST00000336873 NECAB1Q8N987 351 aa9.94□□□□□ -0.82
HPS4-201ENST00000336873 DDX17Q92841 729 aaKnown RBP9.94□□□□□ -0.82
HPS4-201ENST00000336873 JAKMIP1Q96N16 626 aaKnown RBP9.94□□□□□ -0.82
HPS4-201ENST00000336873 MSH6P52701 1360 aa9.94□□□□□ -0.82
HPS4-201ENST00000336873 TULP1O00294 542 aaPredicted RBP9.94□□□□□ -0.82
HPS4-201ENST00000336873 CCT4P50991 539 aaKnown RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms