RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 FBXO38Q6PIJ6 1188 aa10.21□□□□□ -0.78
TDP1-201ENST00000335725 CCDC186Q7Z3E2 898 aa10.21□□□□□ -0.78
TDP1-201ENST00000335725 MSL3Q8N5Y2 521 aaKnown RBP10.21□□□□□ -0.78
TDP1-201ENST00000335725 GPT2Q8TD30 523 aa10.21□□□□□ -0.78
TDP1-201ENST00000335725 EIF3CQ99613 913 aaKnown RBP10.21□□□□□ -0.78
TDP1-201ENST00000335725 SMC3Q9UQE7 1217 aa10.21□□□□□ -0.78
TDP1-201ENST00000335725 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.2□□□□□ -0.78
TDP1-201ENST00000335725 SGSM2O43147 1006 aa10.2□□□□□ -0.78
TDP1-201ENST00000335725 EXOC4Q96A65 974 aa10.2□□□□□ -0.78
TDP1-201ENST00000335725 PTPRCP08575 1304 aa10.2□□□□□ -0.78
TDP1-201ENST00000335725 PRPF40AO75400 957 aaKnown RBP10.2□□□□□ -0.78
TDP1-201ENST00000335725 CCT2P78371 535 aaKnown RBP10.2□□□□□ -0.78
TDP1-201ENST00000335725 GBP6Q6ZN66 633 aa10.2□□□□□ -0.78
TDP1-201ENST00000335725 GTF3C6Q969F1 213 aa10.2□□□□□ -0.78
TDP1-201ENST00000335725 NAIF1Q69YI7 327 aaPredicted RBP10.2□□□□□ -0.78
TDP1-201ENST00000335725 TTC19Q6DKK2 380 aaPredicted RBP10.2□□□□□ -0.78
TDP1-201ENST00000335725 SPATS2LQ9NUQ6 558 aaKnown RBP10.2□□□□□ -0.78
TDP1-201ENST00000335725 ANKRD36BQ8N2N9 1353 aa10.19□□□□□ -0.78
TDP1-201ENST00000335725 CORO7P57737 925 aa10.19□□□□□ -0.78
TDP1-201ENST00000335725 PDE3AQ14432 1141 aa10.19□□□□□ -0.78
TDP1-201ENST00000335725 RBBP5Q15291 538 aaKnown RBP10.19□□□□□ -0.78
TDP1-201ENST00000335725 PDCD2Q16342 344 aaPredicted RBP10.19□□□□□ -0.78
TDP1-201ENST00000335725 TEX11Q8IYF3 940 aa10.19□□□□□ -0.78
TDP1-201ENST00000335725 KDM4CQ9H3R0 1056 aa10.19□□□□□ -0.78
TDP1-201ENST00000335725 CCDC18Q5T9S5 1454 aa10.19□□□□□ -0.78
TDP1-201ENST00000335725 RAPGEF2Q9Y4G8 1499 aa10.19□□□□□ -0.78
TDP1-201ENST00000335725 POLD1P28340 1107 aa10.19□□□□□ -0.78
TDP1-201ENST00000335725 TTLL5Q6EMB2 1281 aa10.19□□□□□ -0.78
TDP1-201ENST00000335725 ERC1Q8IUD2 1116 aa10.19□□□□□ -0.78
TDP1-201ENST00000335725 TATDN2Q93075 761 aa10.19□□□□□ -0.78
TDP1-201ENST00000335725 MKRN1Q9UHC7 482 aaKnown RBP10.19□□□□□ -0.78
TDP1-201ENST00000335725 ABCD1P33897 745 aa10.19□□□□□ -0.78
TDP1-201ENST00000335725 SMARCE1Q969G3 411 aa10.19□□□□□ -0.78
TDP1-201ENST00000335725 GNL3LQ9NVN8 582 aaKnown RBP10.19□□□□□ -0.78
TDP1-201ENST00000335725 TMEM63CQ9P1W3 806 aa10.19□□□□□ -0.78
TDP1-201ENST00000335725 RBM27Q9P2N5 1060 aaKnown RBP10.19□□□□□ -0.78
TDP1-201ENST00000335725 KINO60870 393 aaKnown RBP10.18□□□□□ -0.78
TDP1-201ENST00000335725 SCP2P22307 547 aa10.18□□□□□ -0.78
TDP1-201ENST00000335725 NEDD9Q14511 834 aa10.18□□□□□ -0.78
TDP1-201ENST00000335725 SPATA31E1Q6ZUB1 1445 aa10.18□□□□□ -0.78
TDP1-201ENST00000335725 FAXDC2Q96IV6 333 aa10.18□□□□□ -0.78
TDP1-201ENST00000335725 VEZTQ9HBM0 779 aa10.18□□□□□ -0.78
TDP1-201ENST00000335725 USP25Q9UHP3 1055 aa10.18□□□□□ -0.78
TDP1-201ENST00000335725 SPAG9O60271 1321 aaKnown RBP10.18□□□□□ -0.78
TDP1-201ENST00000335725 KIF27Q86VH2 1401 aa10.18□□□□□ -0.78
TDP1-201ENST00000335725 POLR3GO15318 223 aaPredicted RBP10.18□□□□□ -0.78
TDP1-201ENST00000335725 TRIM6Q9C030 488 aaPredicted RBP10.18□□□□□ -0.78
TDP1-201ENST00000335725 A1CFQ9NQ94 594 aaKnown RBP10.18□□□□□ -0.78
TDP1-201ENST00000335725 A0A087WUV0 522 aaPredicted RBP10.18□□□□□ -0.78
TDP1-201ENST00000335725 RTF1Q92541 710 aaKnown RBP10.18□□□□□ -0.78
TDP1-201ENST00000335725 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.18□□□□□ -0.78
TDP1-201ENST00000335725 SCRIBQ14160 1630 aa10.17□□□□□ -0.78
TDP1-201ENST00000335725 U2SURPO15042 1029 aaKnown RBP10.17□□□□□ -0.78
TDP1-201ENST00000335725 PPFIA2O75334 1257 aa10.17□□□□□ -0.78
TDP1-201ENST00000335725 INHBEP58166 350 aa10.17□□□□□ -0.78
TDP1-201ENST00000335725 ANKRD30AQ9BXX3 1397 aa10.17□□□□□ -0.78
TDP1-201ENST00000335725 PNMA6AP0CW24 399 aaPredicted RBP10.17□□□□□ -0.78
TDP1-201ENST00000335725 ICA1Q05084 483 aa10.17□□□□□ -0.78
TDP1-201ENST00000335725 CCDC30Q5VVM6 783 aa10.17□□□□□ -0.78
TDP1-201ENST00000335725 TMCO3Q6UWJ1 677 aa10.17□□□□□ -0.78
TDP1-201ENST00000335725 CCDC26Q8TAB7 109 aa10.17□□□□□ -0.78
TDP1-201ENST00000335725 RWDD1Q9H446 243 aaPredicted RBP10.17□□□□□ -0.78
TDP1-201ENST00000335725 PYCARDQ9ULZ3 195 aa10.17□□□□□ -0.78
TDP1-201ENST00000335725 FHOD1Q9Y613 1164 aa10.17□□□□□ -0.78
TDP1-201ENST00000335725 TMCO5BA8MYB1 307 aa10.17□□□□□ -0.78
TDP1-201ENST00000335725 MAGEA8P43361 318 aa10.17□□□□□ -0.78
TDP1-201ENST00000335725 SF3A1Q15459 793 aaKnown RBP10.17□□□□□ -0.78
TDP1-201ENST00000335725 RPUSD2Q8IZ73 545 aaKnown RBP10.17□□□□□ -0.78
TDP1-201ENST00000335725 ZSCAN16Q9H4T2 348 aaPredicted RBP10.17□□□□□ -0.78
TDP1-201ENST00000335725 ELF1P32519 619 aa10.16□□□□□ -0.78
TDP1-201ENST00000335725 PDZRN3Q9UPQ7 1066 aa10.16□□□□□ -0.78
TDP1-201ENST00000335725 SLU7O95391 586 aaKnown RBP10.16□□□□□ -0.78
TDP1-201ENST00000335725 GCFC2P16383 781 aaKnown RBP10.16□□□□□ -0.78
TDP1-201ENST00000335725 PLA2G4AP47712 749 aa10.16□□□□□ -0.78
TDP1-201ENST00000335725 CRYMQ14894 314 aa10.16□□□□□ -0.78
TDP1-201ENST00000335725 ARMC2Q8NEN0 867 aa10.16□□□□□ -0.78
TDP1-201ENST00000335725 BLMP54132 1417 aaPredicted RBP10.16□□□□□ -0.78
TDP1-201ENST00000335725 TADA2BQ86TJ2 420 aa10.16□□□□□ -0.78
TDP1-201ENST00000335725 ARHGEF1Q92888 912 aaKnown RBP10.16□□□□□ -0.78
TDP1-201ENST00000335725 ZNF428Q96B54 188 aa10.16□□□□□ -0.78
TDP1-201ENST00000335725 DDX11Q96FC9 970 aa10.16□□□□□ -0.78
TDP1-201ENST00000335725 C16orf45Q96MC5 204 aaPredicted RBP10.16□□□□□ -0.78
TDP1-201ENST00000335725 IFT57Q9NWB7 429 aa10.16□□□□□ -0.78
TDP1-201ENST00000335725 KDM4AO75164 1064 aa10.15□□□□□ -0.78
TDP1-201ENST00000335725 RPS6KA5O75582 802 aa10.15□□□□□ -0.78
TDP1-201ENST00000335725 H2AFXP16104 143 aaPredicted RBP10.15□□□□□ -0.78
TDP1-201ENST00000335725 RDXP35241 583 aaKnown RBP10.15□□□□□ -0.78
TDP1-201ENST00000335725 CD151P48509 253 aa10.15□□□□□ -0.78
TDP1-201ENST00000335725 NAA30Q147X3 362 aaPredicted RBP10.15□□□□□ -0.78
TDP1-201ENST00000335725 CEP135Q66GS9 1140 aa10.15□□□□□ -0.78
TDP1-201ENST00000335725 FOXD4L1Q9NU39 408 aa10.15□□□□□ -0.78
TDP1-201ENST00000335725 CHCHD3Q9NX63 227 aaKnown RBP10.15□□□□□ -0.78
TDP1-201ENST00000335725 NF2P35240 595 aa10.15□□□□□ -0.78
TDP1-201ENST00000335725 LMAN1P49257 510 aa10.15□□□□□ -0.78
TDP1-201ENST00000335725 EIF5P55010 431 aaKnown RBP10.15□□□□□ -0.79
TDP1-201ENST00000335725 ELF2Q15723 593 aa10.15□□□□□ -0.79
TDP1-201ENST00000335725 FILIP1Q7Z7B0 1213 aa10.15□□□□□ -0.79
TDP1-201ENST00000335725 TRIM74Q86UV6 250 aa10.15□□□□□ -0.79
TDP1-201ENST00000335725 TRIM73Q86UV7 250 aa10.15□□□□□ -0.79
TDP1-201ENST00000335725 ZNF215Q9UL58 517 aaPredicted RBP10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms