RNA–Protein interactions for RNA: ENST00000334895.9

TPM1-204, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,637 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-204ENST00000334895 MTHFSDQ2M296 383 aaKnown RBP28.38■■■□□ 2.13
TPM1-204ENST00000334895 USP35Q9P2H5 1018 aa28.38■■■□□ 2.13
TPM1-204ENST00000334895 WNK3Q9BYP7 1800 aa28.37■■■□□ 2.13
TPM1-204ENST00000334895 PARP4Q9UKK3 1724 aaKnown RBP28.37■■■□□ 2.13
TPM1-204ENST00000334895 SPATA31A1Q5TZJ5 1347 aa28.37■■■□□ 2.13
TPM1-204ENST00000334895 VPS72Q15906 364 aa28.36■■■□□ 2.13
TPM1-204ENST00000334895 RAPGEF4Q8WZA2 1011 aa28.36■■■□□ 2.13
TPM1-204ENST00000334895 SPATA31A5Q5VU36 1347 aa28.36■■■□□ 2.13
TPM1-204ENST00000334895 SPATA31A7Q8IWB4 1347 aa28.36■■■□□ 2.13
TPM1-204ENST00000334895 CCDC9Q9Y3X0 531 aaKnown RBP28.36■■■□□ 2.13
TPM1-204ENST00000334895 PKD1L3Q7Z443 1732 aa28.35■■■□□ 2.13
TPM1-204ENST00000334895 RXRBP28702 533 aa28.35■■■□□ 2.13
TPM1-204ENST00000334895 GJD4Q96KN9 370 aaPredicted RBP28.35■■■□□ 2.13
TPM1-204ENST00000334895 OVOS2A0A0G2JMS6 1433 aa28.35■■■□□ 2.13
TPM1-204ENST00000334895 DISP2A7MBM2 1401 aa28.35■■■□□ 2.13
TPM1-204ENST00000334895 ZNF521Q96K83 1311 aa28.34■■■□□ 2.13
TPM1-204ENST00000334895 RBM6P78332 1123 aaKnown RBP28.34■■■□□ 2.13
TPM1-204ENST00000334895 PLEKHG2Q9H7P9 1386 aa28.34■■■□□ 2.13
TPM1-204ENST00000334895 TATP17735 454 aaPredicted RBP28.33■■■□□ 2.13
TPM1-204ENST00000334895 RIPK4P57078 832 aa28.33■■■□□ 2.13
TPM1-204ENST00000334895 NCBP3Q53F19 620 aaKnown RBP28.33■■■□□ 2.13
TPM1-204ENST00000334895 TRIM35Q9UPQ4 493 aa28.33■■■□□ 2.13
TPM1-204ENST00000334895 NGEFQ8N5V2 710 aa28.32■■■□□ 2.12
TPM1-204ENST00000334895 IL2RBP14784 551 aa28.32■■■□□ 2.12
TPM1-204ENST00000334895 CCDC27Q2M243 656 aa28.32■■■□□ 2.12
TPM1-204ENST00000334895 PLEKHO1Q53GL0 409 aaPredicted RBP28.31■■■□□ 2.12
TPM1-204ENST00000334895 GAS2L2Q8NHY3 880 aa28.31■■■□□ 2.12
TPM1-204ENST00000334895 AMOTQ4VCS5 1084 aa28.3■■■□□ 2.12
TPM1-204ENST00000334895 WWC1Q8IX03 1113 aa28.3■■■□□ 2.12
TPM1-204ENST00000334895 SHANK3Q9BYB0 1731 aa28.29■■■□□ 2.12
TPM1-204ENST00000334895 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.29■■■□□ 2.125e-8■■■■□ 19.9
TPM1-204ENST00000334895 BRWD3Q6RI45 1802 aa28.28■■■□□ 2.12
TPM1-204ENST00000334895 RGS12O14924 1447 aa28.28■■■□□ 2.12
TPM1-204ENST00000334895 THRAP3Q9Y2W1 955 aaKnown RBP28.28■■■□□ 2.12
TPM1-204ENST00000334895 ZNF530Q6P9A1 599 aaPredicted RBP28.26■■■□□ 2.11
TPM1-204ENST00000334895 BARGINQ6ZT62 677 aa28.25■■■□□ 2.11
TPM1-204ENST00000334895 MAP3K5Q99683 1374 aa28.24■■■□□ 2.11
TPM1-204ENST00000334895 SPG7Q9UQ90 795 aa28.24■■■□□ 2.11
TPM1-204ENST00000334895 THSD7AQ9UPZ6 1657 aa28.23■■■□□ 2.11
TPM1-204ENST00000334895 DCTN1Q14203 1278 aa28.22■■■□□ 2.11
TPM1-204ENST00000334895 ZCRB1Q8TBF4 217 aaKnown RBP28.22■■■□□ 2.11
TPM1-204ENST00000334895 THUMPD2Q9BTF0 503 aaKnown RBP28.22■■■□□ 2.11
TPM1-204ENST00000334895 GNAT3A8MTJ3 354 aa28.21■■■□□ 2.11
TPM1-204ENST00000334895 CYP27B1O15528 508 aa28.21■■■□□ 2.11
TPM1-204ENST00000334895 FAM98CQ17RN3 349 aaKnown RBP28.21■■■□□ 2.11
TPM1-204ENST00000334895 LRRC37A3O60309 1634 aa28.21■■■□□ 2.11
TPM1-204ENST00000334895 LMOD3Q0VAK6 560 aa28.21■■■□□ 2.11
TPM1-204ENST00000334895 AKAP4Q5JQC9 854 aa28.21■■■□□ 2.11
TPM1-204ENST00000334895 CDCA7LQ96GN5 454 aa28.21■■■□□ 2.11
TPM1-204ENST00000334895 PHKG2P15735 406 aa28.2■■■□□ 2.1
TPM1-204ENST00000334895 MCM10Q7L590 875 aa28.2■■■□□ 2.1
TPM1-204ENST00000334895 CDCA7Q9BWT1 371 aaPredicted RBP28.2■■■□□ 2.1
TPM1-204ENST00000334895 SPINK5Q9NQ38 1064 aaPredicted RBP28.2■■■□□ 2.1
TPM1-204ENST00000334895 VIRMAQ69YN4 1812 aaKnown RBP28.2■■■□□ 2.1
TPM1-204ENST00000334895 ADAMTS7Q9UKP4 1686 aa28.2■■■□□ 2.1
TPM1-204ENST00000334895 TNS2Q63HR2 1409 aa28.19■■■□□ 2.1
TPM1-204ENST00000334895 HTATSF1O43719 755 aaKnown RBP28.18■■■□□ 2.1
TPM1-204ENST00000334895 WDR63Q8IWG1 891 aa28.18■■■□□ 2.1
TPM1-204ENST00000334895 PCDH11XQ9BZA7 1347 aa28.18■■■□□ 2.1
TPM1-204ENST00000334895 PCDH11YQ9BZA8 1340 aa28.18■■■□□ 2.1
TPM1-204ENST00000334895 GOLGA2Q08379 1002 aa28.18■■■□□ 2.1
TPM1-204ENST00000334895 C1orf141Q5JVX7 400 aa28.18■■■□□ 2.1
TPM1-204ENST00000334895 IL17REQ8NFR9 667 aa28.18■■■□□ 2.1
TPM1-204ENST00000334895 A0A0G2JS52 829 aa28.17■■■□□ 2.1
TPM1-204ENST00000334895 MYT1Q01538 1121 aa28.17■■■□□ 2.1
TPM1-204ENST00000334895 PDE3BQ13370 1112 aa28.16■■■□□ 2.1
TPM1-204ENST00000334895 IFNL2Q8IZJ0 200 aa28.16■■■□□ 2.1
TPM1-204ENST00000334895 ONECUT3O60422 494 aaPredicted RBP28.15■■■□□ 2.1
TPM1-204ENST00000334895 MPRIPQ6WCQ1 1025 aa28.15■■■□□ 2.1
TPM1-204ENST00000334895 RTF1Q92541 710 aaKnown RBP28.15■■■□□ 2.1
TPM1-204ENST00000334895 KDM6AO15550 1401 aaPredicted RBP28.15■■■□□ 2.1
TPM1-204ENST00000334895 CEMIPQ8WUJ3 1361 aa28.15■■■□□ 2.1
TPM1-204ENST00000334895 SCN11AQ9UI33 1791 aa28.15■■■□□ 2.1
TPM1-204ENST00000334895 SEPT12Q8IYM1 358 aa28.14■■■□□ 2.1
TPM1-204ENST00000334895 LGR6Q9HBX8 967 aa28.14■■■□□ 2.1
TPM1-204ENST00000334895 SLFN5Q08AF3 891 aa28.13■■■□□ 2.09
TPM1-204ENST00000334895 DDX54Q8TDD1 881 aaKnown RBP28.13■■■□□ 2.09
TPM1-204ENST00000334895 IL16Q14005 1332 aa28.12■■■□□ 2.09
TPM1-204ENST00000334895 EXOC5O00471 708 aa28.12■■■□□ 2.09
TPM1-204ENST00000334895 RNMTO43148 476 aaKnown RBP28.11■■■□□ 2.09
TPM1-204ENST00000334895 DDB1Q16531 1140 aa28.11■■■□□ 2.09
TPM1-204ENST00000334895 TRMT2AQ8IZ69 625 aaKnown RBP28.1■■■□□ 2.09
TPM1-204ENST00000334895 NKX1-1Q15270 411 aaPredicted RBP28.1■■■□□ 2.09
TPM1-204ENST00000334895 E9PSI1 815 aa28.09■■■□□ 2.09
TPM1-204ENST00000334895 SOCS7O14512 581 aa28.08■■■□□ 2.09
TPM1-204ENST00000334895 ZNF853P0CG23 659 aa28.08■■■□□ 2.09
TPM1-204ENST00000334895 CALD1Q05682 793 aaKnown RBP28.08■■■□□ 2.09
TPM1-204ENST00000334895 DCAF5Q96JK2 942 aa28.08■■■□□ 2.09
TPM1-204ENST00000334895 TOGARAM1Q9Y4F4 1720 aa28.08■■■□□ 2.09
TPM1-204ENST00000334895 SIPA1L3O60292 1781 aaPredicted RBP28.08■■■□□ 2.09
TPM1-204ENST00000334895 DUSP27Q5VZP5 1158 aa28.07■■■□□ 2.08
TPM1-204ENST00000334895 HSP90AB1P08238 724 aaKnown RBP28.07■■■□□ 2.08
TPM1-204ENST00000334895 IFT57Q9NWB7 429 aa28.07■■■□□ 2.08
TPM1-204ENST00000334895 EP400Q96L91 3159 aa28.06■■■□□ 2.08
TPM1-204ENST00000334895 MRC1P22897 1456 aa28.06■■■□□ 2.08
TPM1-204ENST00000334895 MARCH10Q8NA82 808 aaPredicted RBP28.05■■■□□ 2.08
TPM1-204ENST00000334895 CFAP44Q96MT7 982 aa28.05■■■□□ 2.08
TPM1-204ENST00000334895 TSR2Q969E8 191 aaKnown RBP28.04■■■□□ 2.08
TPM1-204ENST00000334895 LAS1LQ9Y4W2 734 aaKnown RBP28.03■■■□□ 2.08
TPM1-204ENST00000334895 FANCIQ9NVI1 1328 aa28.03■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms