RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 APAF1O14727 1248 aa12.61□□□□□ -0.39
RFX3-201ENST00000302303 IL2RBP14784 551 aa12.61□□□□□ -0.39
RFX3-201ENST00000302303 ZNF772Q68DY9 489 aaPredicted RBP12.61□□□□□ -0.39
RFX3-201ENST00000302303 FAM98CQ17RN3 349 aaKnown RBP12.6□□□□□ -0.39
RFX3-201ENST00000302303 PPP4R3CPQ6ZMV5 832 aa12.6□□□□□ -0.39
RFX3-201ENST00000302303 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.6□□□□□ -0.394e-6■□□□□ 11.2
RFX3-201ENST00000302303 PLEKHG2Q9H7P9 1386 aa12.6□□□□□ -0.39
RFX3-201ENST00000302303 THSD7AQ9UPZ6 1657 aa12.59□□□□□ -0.39
RFX3-201ENST00000302303 SHANK3Q9BYB0 1731 aa12.59□□□□□ -0.39
RFX3-201ENST00000302303 WNK3Q9BYP7 1800 aa12.59□□□□□ -0.39
RFX3-201ENST00000302303 CYP27B1O15528 508 aa12.59□□□□□ -0.39
RFX3-201ENST00000302303 TMPOP42166 694 aaKnown RBP12.59□□□□□ -0.39
RFX3-201ENST00000302303 RAPGEF4Q8WZA2 1011 aa12.59□□□□□ -0.39
RFX3-201ENST00000302303 CCDC9Q9Y3X0 531 aaKnown RBP12.59□□□□□ -0.39
RFX3-201ENST00000302303 PKD1L3Q7Z443 1732 aa12.59□□□□□ -0.39
RFX3-201ENST00000302303 TATP17735 454 aaPredicted RBP12.58□□□□□ -0.4
RFX3-201ENST00000302303 TRIM35Q9UPQ4 493 aa12.58□□□□□ -0.4
RFX3-201ENST00000302303 NFE2L2Q16236 605 aa12.57□□□□□ -0.4
RFX3-201ENST00000302303 ZCRB1Q8TBF4 217 aaKnown RBP12.57□□□□□ -0.4
RFX3-201ENST00000302303 PNNQ9H307 717 aaKnown RBP12.57□□□□□ -0.4
RFX3-201ENST00000302303 RRP7AQ9Y3A4 280 aaKnown RBP12.57□□□□□ -0.4
RFX3-201ENST00000302303 PARP4Q9UKK3 1724 aaKnown RBP12.57□□□□□ -0.4
RFX3-201ENST00000302303 RBM6P78332 1123 aaKnown RBP12.57□□□□□ -0.4
RFX3-201ENST00000302303 AMOTQ4VCS5 1084 aa12.57□□□□□ -0.4
RFX3-201ENST00000302303 PLEKHO1Q53GL0 409 aaPredicted RBP12.57□□□□□ -0.4
RFX3-201ENST00000302303 CDCA7Q9BWT1 371 aaPredicted RBP12.57□□□□□ -0.4
RFX3-201ENST00000302303 ZNF521Q96K83 1311 aa12.56□□□□□ -0.4
RFX3-201ENST00000302303 PHKG2P15735 406 aa12.56□□□□□ -0.4
RFX3-201ENST00000302303 NCBP3Q53F19 620 aaKnown RBP12.56□□□□□ -0.4
RFX3-201ENST00000302303 LRRC37A3O60309 1634 aa12.56□□□□□ -0.4
RFX3-201ENST00000302303 NKX1-1Q15270 411 aaPredicted RBP12.55□□□□□ -0.4
RFX3-201ENST00000302303 MARCH10Q8NA82 808 aaPredicted RBP12.55□□□□□ -0.4
RFX3-201ENST00000302303 IL17REQ8NFR9 667 aa12.55□□□□□ -0.4
RFX3-201ENST00000302303 TNS2Q63HR2 1409 aa12.54□□□□□ -0.4
RFX3-201ENST00000302303 EXOC5O00471 708 aa12.54□□□□□ -0.4
RFX3-201ENST00000302303 RIPK4P57078 832 aa12.54□□□□□ -0.4
RFX3-201ENST00000302303 ZNF530Q6P9A1 599 aaPredicted RBP12.54□□□□□ -0.4
RFX3-201ENST00000302303 SEPT12Q8IYM1 358 aa12.54□□□□□ -0.4
RFX3-201ENST00000302303 GAS2L2Q8NHY3 880 aa12.54□□□□□ -0.4
RFX3-201ENST00000302303 LGR6Q9HBX8 967 aa12.54□□□□□ -0.4
RFX3-201ENST00000302303 SPG7Q9UQ90 795 aa12.54□□□□□ -0.4
RFX3-201ENST00000302303 ADAMTS7Q9UKP4 1686 aa12.54□□□□□ -0.4
RFX3-201ENST00000302303 DLG5Q8TDM6 1919 aa12.54□□□□□ -0.4
RFX3-201ENST00000302303 MAPK8IP3Q9UPT6 1336 aa12.53□□□□□ -0.4
RFX3-201ENST00000302303 RXRBP28702 533 aa12.53□□□□□ -0.4
RFX3-201ENST00000302303 DCTN1Q14203 1278 aa12.53□□□□□ -0.4
RFX3-201ENST00000302303 NEUROD2Q15784 382 aa12.53□□□□□ -0.4
RFX3-201ENST00000302303 DDB1Q16531 1140 aa12.53□□□□□ -0.4
RFX3-201ENST00000302303 CCDC27Q2M243 656 aa12.53□□□□□ -0.4
RFX3-201ENST00000302303 AKAP4Q5JQC9 854 aa12.53□□□□□ -0.4
RFX3-201ENST00000302303 KDM6AO15550 1401 aaPredicted RBP12.53□□□□□ -0.4
RFX3-201ENST00000302303 WWC1Q8IX03 1113 aa12.52□□□□□ -0.4
RFX3-201ENST00000302303 IFNL2Q8IZJ0 200 aa12.52□□□□□ -0.4
RFX3-201ENST00000302303 DDX54Q8TDD1 881 aaKnown RBP12.52□□□□□ -0.4
RFX3-201ENST00000302303 SALL2Q9Y467 1007 aaPredicted RBP12.52□□□□□ -0.4
RFX3-201ENST00000302303 CEMIPQ8WUJ3 1361 aa12.52□□□□□ -0.41
RFX3-201ENST00000302303 PCDH11XQ9BZA7 1347 aa12.52□□□□□ -0.41
RFX3-201ENST00000302303 PCDH11YQ9BZA8 1340 aa12.52□□□□□ -0.41
RFX3-201ENST00000302303 GNAT3A8MTJ3 354 aa12.52□□□□□ -0.41
RFX3-201ENST00000302303 HNRNPUQ00839 825 aaKnown RBP eCLIP12.52□□□□□ -0.41
RFX3-201ENST00000302303 THUMPD2Q9BTF0 503 aaKnown RBP12.52□□□□□ -0.41
RFX3-201ENST00000302303 RGS12O14924 1447 aa12.52□□□□□ -0.41
RFX3-201ENST00000302303 MAP3K5Q99683 1374 aa12.51□□□□□ -0.41
RFX3-201ENST00000302303 RNMTO43148 476 aaKnown RBP12.51□□□□□ -0.41
RFX3-201ENST00000302303 HTATSF1O43719 755 aaKnown RBP12.51□□□□□ -0.41
RFX3-201ENST00000302303 MPRIPQ6WCQ1 1025 aa12.51□□□□□ -0.41
RFX3-201ENST00000302303 MCM10Q7L590 875 aa12.51□□□□□ -0.41
RFX3-201ENST00000302303 SPINK5Q9NQ38 1064 aaPredicted RBP12.51□□□□□ -0.41
RFX3-201ENST00000302303 EP400Q96L91 3159 aa12.51□□□□□ -0.41
RFX3-201ENST00000302303 BRWD3Q6RI45 1802 aa12.51□□□□□ -0.41
RFX3-201ENST00000302303 FAM182BQ5T319 152 aa12.5□□□□□ -0.41
RFX3-201ENST00000302303 NGEFQ8N5V2 710 aa12.5□□□□□ -0.41
RFX3-201ENST00000302303 NEFMP07197 916 aa12.49□□□□□ -0.41
RFX3-201ENST00000302303 TOGARAM1Q9Y4F4 1720 aa12.49□□□□□ -0.41
RFX3-201ENST00000302303 BCL9O00512 1426 aa12.49□□□□□ -0.41
RFX3-201ENST00000302303 C1orf141Q5JVX7 400 aa12.48□□□□□ -0.41
RFX3-201ENST00000302303 DCAF5Q96JK2 942 aa12.48□□□□□ -0.41
RFX3-201ENST00000302303 ZNF853P0CG23 659 aa12.47□□□□□ -0.41
RFX3-201ENST00000302303 PTF1AQ7RTS3 328 aa12.47□□□□□ -0.41
RFX3-201ENST00000302303 CDCA7LQ96GN5 454 aa12.47□□□□□ -0.41
RFX3-201ENST00000302303 SCN11AQ9UI33 1791 aa12.47□□□□□ -0.41
RFX3-201ENST00000302303 ZBED9Q6R2W3 1325 aa12.47□□□□□ -0.41
RFX3-201ENST00000302303 MRC1P22897 1456 aa12.47□□□□□ -0.41
RFX3-201ENST00000302303 PDE3BQ13370 1112 aa12.47□□□□□ -0.41
RFX3-201ENST00000302303 WDR63Q8IWG1 891 aa12.47□□□□□ -0.41
RFX3-201ENST00000302303 TRMT2AQ8IZ69 625 aaKnown RBP12.47□□□□□ -0.41
RFX3-201ENST00000302303 YTHDC1Q96MU7 727 aaKnown RBP12.47□□□□□ -0.41
RFX3-201ENST00000302303 A0A0G2JS52 829 aa12.46□□□□□ -0.42
RFX3-201ENST00000302303 KCNQ2O43526 872 aa12.46□□□□□ -0.42
RFX3-201ENST00000302303 HSP90AB1P08238 724 aaKnown RBP12.46□□□□□ -0.42
RFX3-201ENST00000302303 MYT1Q01538 1121 aa12.46□□□□□ -0.42
RFX3-201ENST00000302303 KRT27Q7Z3Y8 459 aa12.46□□□□□ -0.42
RFX3-201ENST00000302303 VIRMAQ69YN4 1812 aaKnown RBP12.45□□□□□ -0.42
RFX3-201ENST00000302303 SIPA1L3O60292 1781 aaPredicted RBP12.45□□□□□ -0.42
RFX3-201ENST00000302303 ERVV-2B6SEH9 535 aa12.45□□□□□ -0.42
RFX3-201ENST00000302303 CHL1O00533 1208 aa12.45□□□□□ -0.42
RFX3-201ENST00000302303 LMOD3Q0VAK6 560 aa12.45□□□□□ -0.42
RFX3-201ENST00000302303 NFATC2IPQ8NCF5 419 aa12.45□□□□□ -0.42
RFX3-201ENST00000302303 SLC52A2Q9HAB3 445 aa12.45□□□□□ -0.42
RFX3-201ENST00000302303 PRIM1P49642 420 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms