RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 NUTM2BA6NNL0 878 aaPredicted RBP29.28■■■□□ 2.28
CDX1-201ENST00000231656 NUTM2EB1AL46 878 aaPredicted RBP29.28■■■□□ 2.28
CDX1-201ENST00000231656 NUTM2AQ8IVF1 878 aaPredicted RBP29.28■■■□□ 2.28
CDX1-201ENST00000231656 BCAR3O75815 825 aa29.27■■■□□ 2.28
CDX1-201ENST00000231656 ADAMTS2O95450 1211 aa29.27■■■□□ 2.28
CDX1-201ENST00000231656 HSPA1LP34931 641 aa29.27■■■□□ 2.28
CDX1-201ENST00000231656 BTG4Q9NY30 223 aa29.26■■■□□ 2.28
CDX1-201ENST00000231656 GAS2L2Q8NHY3 880 aa29.26■■■□□ 2.27
CDX1-201ENST00000231656 IL16Q14005 1332 aa29.25■■■□□ 2.27
CDX1-201ENST00000231656 LMOD3Q0VAK6 560 aa29.25■■■□□ 2.27
CDX1-201ENST00000231656 EVA1CP58658 441 aa29.24■■■□□ 2.27
CDX1-201ENST00000231656 STRN4Q9NRL3 753 aa29.24■■■□□ 2.27
CDX1-201ENST00000231656 TOM1L2Q6ZVM7 507 aa29.24■■■□□ 2.27
CDX1-201ENST00000231656 PLCH1Q4KWH8 1693 aa29.23■■■□□ 2.27
CDX1-201ENST00000231656 LARP1Q6PKG0 1096 aaKnown RBP29.21■■■□□ 2.27
CDX1-201ENST00000231656 RARSP54136 660 aaKnown RBP29.2■■■□□ 2.26
CDX1-201ENST00000231656 RAPGEF4Q8WZA2 1011 aa29.2■■■□□ 2.26
CDX1-201ENST00000231656 FANCIQ9NVI1 1328 aa29.2■■■□□ 2.26
CDX1-201ENST00000231656 THUMPD2Q9BTF0 503 aaKnown RBP29.19■■■□□ 2.26
CDX1-201ENST00000231656 AMOTQ4VCS5 1084 aa29.18■■■□□ 2.26
CDX1-201ENST00000231656 PLEKHO1Q53GL0 409 aaPredicted RBP29.18■■■□□ 2.26
CDX1-201ENST00000231656 CARD10Q9BWT7 1032 aa29.18■■■□□ 2.26
CDX1-201ENST00000231656 SPATA31A6Q5VVP1 1343 aa29.18■■■□□ 2.26
CDX1-201ENST00000231656 DCTN1Q14203 1278 aa29.18■■■□□ 2.26
CDX1-201ENST00000231656 MEGF6O75095 1541 aa29.17■■■□□ 2.26
CDX1-201ENST00000231656 CRB1P82279 1406 aa29.17■■■□□ 2.26
CDX1-201ENST00000231656 GNAT3A8MTJ3 354 aa29.16■■■□□ 2.26
CDX1-201ENST00000231656 TATP17735 454 aaPredicted RBP29.16■■■□□ 2.26
CDX1-201ENST00000231656 CALD1Q05682 793 aaKnown RBP29.16■■■□□ 2.26
CDX1-201ENST00000231656 CT47B1P0C2W7 299 aaPredicted RBP29.15■■■□□ 2.26
CDX1-201ENST00000231656 MCM10Q7L590 875 aa29.15■■■□□ 2.26
CDX1-201ENST00000231656 RTF1Q92541 710 aaKnown RBP29.15■■■□□ 2.26
CDX1-201ENST00000231656 TSR2Q969E8 191 aaKnown RBP29.15■■■□□ 2.26
CDX1-201ENST00000231656 NRAPQ86VF7 1730 aa29.15■■■□□ 2.26
CDX1-201ENST00000231656 MAP3K5Q99683 1374 aa29.15■■■□□ 2.26
CDX1-201ENST00000231656 HTATSF1O43719 755 aaKnown RBP29.14■■■□□ 2.26
CDX1-201ENST00000231656 PDE3AQ14432 1141 aa29.14■■■□□ 2.26
CDX1-201ENST00000231656 RBM19Q9Y4C8 960 aaKnown RBP29.14■■■□□ 2.26
CDX1-201ENST00000231656 PLEKHG2Q9H7P9 1386 aa29.14■■■□□ 2.26
CDX1-201ENST00000231656 NWD2Q9ULI1 1742 aa29.14■■■□□ 2.25
CDX1-201ENST00000231656 LRP6O75581 1613 aa29.12■■■□□ 2.25
CDX1-201ENST00000231656 SLIT2O94813 1529 aa29.12■■■□□ 2.25
CDX1-201ENST00000231656 ZNF530Q6P9A1 599 aaPredicted RBP29.12■■■□□ 2.25
CDX1-201ENST00000231656 PARP4Q9UKK3 1724 aaKnown RBP29.12■■■□□ 2.25
CDX1-201ENST00000231656 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.11■■■□□ 2.25
CDX1-201ENST00000231656 PKD1L3Q7Z443 1732 aa29.11■■■□□ 2.25
CDX1-201ENST00000231656 AKAP4Q5JQC9 854 aa29.1■■■□□ 2.25
CDX1-201ENST00000231656 OVOS2A0A0G2JMS6 1433 aa29.1■■■□□ 2.25
CDX1-201ENST00000231656 EXOSC9Q06265 439 aaKnown RBP29.09■■■□□ 2.25
CDX1-201ENST00000231656 IFT57Q9NWB7 429 aa29.09■■■□□ 2.25
CDX1-201ENST00000231656 USP35Q9P2H5 1018 aa29.08■■■□□ 2.25
CDX1-201ENST00000231656 SPG7Q9UQ90 795 aa29.08■■■□□ 2.25
CDX1-201ENST00000231656 ZNF853P0CG23 659 aa29.08■■■□□ 2.25
CDX1-201ENST00000231656 GNAI1P63096 354 aa29.08■■■□□ 2.25
CDX1-201ENST00000231656 LAS1LQ9Y4W2 734 aaKnown RBP29.08■■■□□ 2.25
CDX1-201ENST00000231656 LRRC37A3O60309 1634 aa29.08■■■□□ 2.25
CDX1-201ENST00000231656 IL2RBP14784 551 aa29.07■■■□□ 2.24
CDX1-201ENST00000231656 C1orf141Q5JVX7 400 aa29.07■■■□□ 2.24
CDX1-201ENST00000231656 IL17REQ8NFR9 667 aa29.07■■■□□ 2.24
CDX1-201ENST00000231656 CFAP44Q96MT7 982 aa29.07■■■□□ 2.24
CDX1-201ENST00000231656 C8orf37Q96NL8 207 aa29.07■■■□□ 2.24
CDX1-201ENST00000231656 VIRMAQ69YN4 1812 aaKnown RBP29.07■■■□□ 2.24
CDX1-201ENST00000231656 CANXP27824 592 aaKnown RBP29.06■■■□□ 2.24
CDX1-201ENST00000231656 NGLY1Q96IV0 654 aa29.06■■■□□ 2.24
CDX1-201ENST00000231656 KDM2BQ8NHM5 1336 aa29.04■■■□□ 2.24
CDX1-201ENST00000231656 FRAT1Q92837 279 aaPredicted RBP29.03■■■□□ 2.24
CDX1-201ENST00000231656 CEMIPQ8WUJ3 1361 aa29.03■■■□□ 2.24
CDX1-201ENST00000231656 BCL2L13Q9BXK5 485 aa29.03■■■□□ 2.24
CDX1-201ENST00000231656 PANK1Q8TE04 598 aa29.02■■■□□ 2.24
CDX1-201ENST00000231656 MBIPQ9NS73 344 aa29.02■■■□□ 2.24
CDX1-201ENST00000231656 MPRIPQ6WCQ1 1025 aa29.01■■■□□ 2.23
CDX1-201ENST00000231656 UNC5CLQ8IV45 518 aa29.01■■■□□ 2.23
CDX1-201ENST00000231656 FNBP4Q8N3X1 1017 aaPredicted RBP29.01■■■□□ 2.23
CDX1-201ENST00000231656 LGR6Q9HBX8 967 aa29.01■■■□□ 2.23
CDX1-201ENST00000231656 BCL9LQ86UU0 1499 aa29.01■■■□□ 2.23
CDX1-201ENST00000231656 PHKG2P15735 406 aa29.01■■■□□ 2.23
CDX1-201ENST00000231656 ZCRB1Q8TBF4 217 aaKnown RBP29.01■■■□□ 2.23
CDX1-201ENST00000231656 CHL1O00533 1208 aa29■■■□□ 2.23
CDX1-201ENST00000231656 IFNL2Q8IZJ0 200 aa29■■■□□ 2.23
CDX1-201ENST00000231656 SPATA31A1Q5TZJ5 1347 aa29■■■□□ 2.23
CDX1-201ENST00000231656 WNK3Q9BYP7 1800 aa29■■■□□ 2.23
CDX1-201ENST00000231656 DISP2A7MBM2 1401 aa28.99■■■□□ 2.23
CDX1-201ENST00000231656 CYP27B1O15528 508 aa28.99■■■□□ 2.23
CDX1-201ENST00000231656 ADAMTS7Q9UKP4 1686 aa28.99■■■□□ 2.23
CDX1-201ENST00000231656 SHANK3Q9BYB0 1731 aa28.98■■■□□ 2.23
CDX1-201ENST00000231656 RNMTO43148 476 aaKnown RBP28.98■■■□□ 2.23
CDX1-201ENST00000231656 MEX3CQ5U5Q3 659 aaKnown RBP28.98■■■□□ 2.23
CDX1-201ENST00000231656 SPATA31A5Q5VU36 1347 aa28.98■■■□□ 2.23
CDX1-201ENST00000231656 SPATA31A7Q8IWB4 1347 aa28.98■■■□□ 2.23
CDX1-201ENST00000231656 CENPQQ7L2Z9 268 aaPredicted RBP28.97■■■□□ 2.23
CDX1-201ENST00000231656 COG6Q9Y2V7 657 aa28.97■■■□□ 2.23
CDX1-201ENST00000231656 PCDH11XQ9BZA7 1347 aa28.97■■■□□ 2.23
CDX1-201ENST00000231656 PCDH11YQ9BZA8 1340 aa28.97■■■□□ 2.23
CDX1-201ENST00000231656 SCN11AQ9UI33 1791 aa28.97■■■□□ 2.23
CDX1-201ENST00000231656 SSH1Q8WYL5 1049 aa28.96■■■□□ 2.23
CDX1-201ENST00000231656 TNNQ9UQP3 1299 aa28.96■■■□□ 2.23
CDX1-201ENST00000231656 RLBP1P12271 317 aa28.96■■■□□ 2.23
CDX1-201ENST00000231656 THRAP3Q9Y2W1 955 aaKnown RBP28.96■■■□□ 2.23
CDX1-201ENST00000231656 SMC4Q9NTJ3 1288 aa28.95■■■□□ 2.22
CDX1-201ENST00000231656 MIS18AQ9NYP9 233 aa28.95■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms