RNA–Protein interactions for RNA: ENST00000222823.8

NOD1-201, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOD1, Length 4,499 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-201ENST00000222823 XBP1P17861 261 aa13.78□□□□□ -0.2
NOD1-201ENST00000222823 TNNT3P45378 269 aaPredicted RBP13.78□□□□□ -0.2
NOD1-201ENST00000222823 CABP4P57796 275 aa13.78□□□□□ -0.2
NOD1-201ENST00000222823 TOM1L2Q6ZVM7 507 aa13.78□□□□□ -0.2
NOD1-201ENST00000222823 PLXNC1O60486 1568 aa13.78□□□□□ -0.2
NOD1-201ENST00000222823 DDX54Q8TDD1 881 aaKnown RBP13.78□□□□□ -0.2
NOD1-201ENST00000222823 PRPF40AO75400 957 aaKnown RBP13.77□□□□□ -0.2
NOD1-201ENST00000222823 SIL1Q9H173 461 aa13.77□□□□□ -0.2
NOD1-201ENST00000222823 ALDH1L2Q3SY69 923 aa13.77□□□□□ -0.21
NOD1-201ENST00000222823 CCDC70Q6NSX1 233 aa13.77□□□□□ -0.21
NOD1-201ENST00000222823 RPAP2Q8IXW5 612 aaPredicted RBP13.77□□□□□ -0.21
NOD1-201ENST00000222823 MAGI2Q86UL8 1455 aa13.77□□□□□ -0.21
NOD1-201ENST00000222823 ABCC1P33527 1531 aa13.77□□□□□ -0.21
NOD1-201ENST00000222823 SRGAP3O43295 1099 aa13.77□□□□□ -0.21
NOD1-201ENST00000222823 IQGAP3Q86VI3 1631 aa13.77□□□□□ -0.21
NOD1-201ENST00000222823 TMEM57Q8N5G2 664 aa13.76□□□□□ -0.21
NOD1-201ENST00000222823 PRDM11Q9NQV5 511 aa13.76□□□□□ -0.21
NOD1-201ENST00000222823 SPG7Q9UQ90 795 aa13.76□□□□□ -0.21
NOD1-201ENST00000222823 TRPM2O94759 1503 aa13.76□□□□□ -0.21
NOD1-201ENST00000222823 IL16Q14005 1332 aa13.76□□□□□ -0.21
NOD1-201ENST00000222823 ATP2B1P20020 1258 aa13.76□□□□□ -0.21
NOD1-201ENST00000222823 CCDC158Q5M9N0 1113 aa13.76□□□□□ -0.21
NOD1-201ENST00000222823 WAPLQ7Z5K2 1190 aa13.76□□□□□ -0.21
NOD1-201ENST00000222823 BRMS1Q9HCU9 246 aa13.76□□□□□ -0.21
NOD1-201ENST00000222823 CNNM1Q9NRU3 951 aa13.76□□□□□ -0.21
NOD1-201ENST00000222823 FIBPO43427 364 aa13.76□□□□□ -0.21
NOD1-201ENST00000222823 THUMPD2Q9BTF0 503 aaKnown RBP13.76□□□□□ -0.21
NOD1-201ENST00000222823 IFT57Q9NWB7 429 aa13.76□□□□□ -0.21
NOD1-201ENST00000222823 NAT10Q9H0A0 1025 aaKnown RBP13.75□□□□□ -0.21
NOD1-201ENST00000222823 CYP46A1Q9Y6A2 500 aa13.75□□□□□ -0.21
NOD1-201ENST00000222823 TRPM1Q7Z4N2 1603 aa13.75□□□□□ -0.21
NOD1-201ENST00000222823 POLR1AO95602 1720 aaPredicted RBP13.75□□□□□ -0.21
NOD1-201ENST00000222823 UNC13BO14795 1591 aa13.75□□□□□ -0.21
NOD1-201ENST00000222823 GPS2Q13227 327 aa13.75□□□□□ -0.21
NOD1-201ENST00000222823 C8orf34Q49A92 452 aa13.75□□□□□ -0.21
NOD1-201ENST00000222823 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.75□□□□□ -0.21
NOD1-201ENST00000222823 SPINK5Q9NQ38 1064 aaPredicted RBP13.75□□□□□ -0.21
NOD1-201ENST00000222823 KDM2BQ8NHM5 1336 aa13.75□□□□□ -0.21
NOD1-201ENST00000222823 KINO60870 393 aaKnown RBP13.75□□□□□ -0.21
NOD1-201ENST00000222823 MYL6BP14649 208 aa13.75□□□□□ -0.21
NOD1-201ENST00000222823 MTMR7Q9Y216 660 aa13.75□□□□□ -0.21
NOD1-201ENST00000222823 FAM13BQ9NYF5 915 aa13.74□□□□□ -0.21
NOD1-201ENST00000222823 SAMD1Q6SPF0 538 aaPredicted RBP13.74□□□□□ -0.21
NOD1-201ENST00000222823 CWC22Q9HCG8 908 aaKnown RBP13.74□□□□□ -0.21
NOD1-201ENST00000222823 TRIM27P14373 513 aa13.74□□□□□ -0.21
NOD1-201ENST00000222823 IL1RAPL2Q9NP60 686 aa13.74□□□□□ -0.21
NOD1-201ENST00000222823 SBNO2Q9Y2G9 1366 aa13.74□□□□□ -0.21
NOD1-201ENST00000222823 SYNMO15061 1565 aa13.74□□□□□ -0.21
NOD1-201ENST00000222823 KDM5AP29375 1690 aaKnown RBP13.73□□□□□ -0.21
NOD1-201ENST00000222823 RRP12Q5JTH9 1297 aaKnown RBP13.73□□□□□ -0.21
NOD1-201ENST00000222823 PTPRTO14522 1441 aa13.73□□□□□ -0.21
NOD1-201ENST00000222823 K7ELQ4 463 aaPredicted RBP13.73□□□□□ -0.21
NOD1-201ENST00000222823 KDM4AO75164 1064 aa13.73□□□□□ -0.21
NOD1-201ENST00000222823 ZC3H6P61129 1189 aaKnown RBP13.73□□□□□ -0.21
NOD1-201ENST00000222823 OLFM4Q6UX06 510 aa13.73□□□□□ -0.21
NOD1-201ENST00000222823 BTBD11A6QL63 1104 aa13.73□□□□□ -0.21
NOD1-201ENST00000222823 CCDC43Q96MW1 224 aaKnown RBP13.73□□□□□ -0.21
NOD1-201ENST00000222823 XPCQ01831 940 aaPredicted RBP13.72□□□□□ -0.21
NOD1-201ENST00000222823 TRIM5Q9C035 493 aa13.72□□□□□ -0.21
NOD1-201ENST00000222823 PPP6R1Q9UPN7 881 aa13.72□□□□□ -0.21
NOD1-201ENST00000222823 CHD1O14646 1710 aa13.72□□□□□ -0.21
NOD1-201ENST00000222823 TTC39AQ5SRH9 613 aa13.72□□□□□ -0.21
NOD1-201ENST00000222823 FBXO31Q5XUX0 539 aaPredicted RBP13.72□□□□□ -0.21
NOD1-201ENST00000222823 ANO8Q9HCE9 1232 aaPredicted RBP13.72□□□□□ -0.21
NOD1-201ENST00000222823 LETM1O95202 739 aaPredicted RBP13.72□□□□□ -0.21
NOD1-201ENST00000222823 CCDC57Q2TAC2 916 aa13.72□□□□□ -0.21
NOD1-201ENST00000222823 GNAT3A8MTJ3 354 aa13.71□□□□□ -0.21
NOD1-201ENST00000222823 AACSQ86V21 672 aa13.71□□□□□ -0.21
NOD1-201ENST00000222823 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.71□□□□□ -0.21
NOD1-201ENST00000222823 CEP126Q9P2H0 1117 aa13.71□□□□□ -0.21
NOD1-201ENST00000222823 ANKRD1Q15327 319 aa13.71□□□□□ -0.21
NOD1-201ENST00000222823 FMNL2Q96PY5 1086 aa13.71□□□□□ -0.21
NOD1-201ENST00000222823 MIS18AQ9NYP9 233 aa13.71□□□□□ -0.21
NOD1-201ENST00000222823 PCDHB15Q9Y5E8 787 aa13.71□□□□□ -0.21
NOD1-201ENST00000222823 MAP4K4O95819 1239 aaPredicted RBP13.71□□□□□ -0.22
NOD1-201ENST00000222823 STK38Q15208 465 aa13.71□□□□□ -0.22
NOD1-201ENST00000222823 EXOC6BQ9Y2D4 811 aa13.71□□□□□ -0.22
NOD1-201ENST00000222823 CDC42BPBQ9Y5S2 1711 aa13.71□□□□□ -0.22
NOD1-201ENST00000222823 DCTN1Q14203 1278 aa13.7□□□□□ -0.22
NOD1-201ENST00000222823 MCM10Q7L590 875 aa13.7□□□□□ -0.22
NOD1-201ENST00000222823 GNL3LQ9NVN8 582 aaKnown RBP13.7□□□□□ -0.22
NOD1-201ENST00000222823 CCDC39Q9UFE4 941 aa13.7□□□□□ -0.22
NOD1-201ENST00000222823 WDR33Q9C0J8 1336 aaKnown RBP13.7□□□□□ -0.22
NOD1-201ENST00000222823 POGZQ7Z3K3 1410 aa13.7□□□□□ -0.22
NOD1-201ENST00000222823 CEBPZQ03701 1054 aaKnown RBP13.7□□□□□ -0.22
NOD1-201ENST00000222823 BLOC1S2Q6QNY1 142 aa13.7□□□□□ -0.22
NOD1-201ENST00000222823 KCNH5Q8NCM2 988 aa13.7□□□□□ -0.22
NOD1-201ENST00000222823 MPHOSPH8Q99549 860 aa13.7□□□□□ -0.22
NOD1-201ENST00000222823 MYOM2P54296 1465 aa13.7□□□□□ -0.22
NOD1-201ENST00000222823 ZCCHC11Q5TAX3 1644 aaKnown RBP13.69□□□□□ -0.22
NOD1-201ENST00000222823 ZNF396Q96N95 335 aaPredicted RBP13.69□□□□□ -0.22
NOD1-201ENST00000222823 SLC3A2P08195 630 aaKnown RBP13.69□□□□□ -0.22
NOD1-201ENST00000222823 STK3Q13188 491 aa13.69□□□□□ -0.22
NOD1-201ENST00000222823 NME9Q86XW9 330 aa13.69□□□□□ -0.22
NOD1-201ENST00000222823 MNS1Q8NEH6 495 aa13.69□□□□□ -0.22
NOD1-201ENST00000222823 ZNF521Q96K83 1311 aa13.69□□□□□ -0.22
NOD1-201ENST00000222823 HDAC1Q13547 482 aaPredicted RBP13.69□□□□□ -0.22
NOD1-201ENST00000222823 NACAP1Q9BZK3 213 aa13.68□□□□□ -0.22
NOD1-201ENST00000222823 TSPY26PQ9H489 355 aa13.68□□□□□ -0.22
NOD1-201ENST00000222823 WASLO00401 505 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms