RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 ATP6AP2A0A1C7CYW4 349 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 SAC3D1A6NKF1 404 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 STX7O15400 261 aaKnown RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 ADCY6O43306 1168 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 SNNO75324 88 aaPredicted RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 VPS26AO75436 327 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 ATP6AP2O75787 350 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 CRTAMO95727 393 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 MT-CYBP00156 380 aaPredicted RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 VAMP1P23763 118 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 HTR2BP41595 481 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 CD86P42081 329 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 NUMBP49757 651 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 IRF9Q00978 393 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 DLG1Q12959 904 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 FBXO43Q4G163 708 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 ANKRD39Q53RE8 183 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 CMPK2Q5EBM0 449 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 ANKS6Q68DC2 871 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 ESRP1Q6NXG1 681 aaKnown RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 MIER2Q8N344 545 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 AVL9Q8NBF6 648 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 PTCD2Q8WV60 388 aaKnown RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 LPPQ93052 612 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 HS6ST2Q96MM7 605 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 DDX28Q9NUL7 540 aaKnown RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 IDH3BO43837 385 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 PAGE1O75459 146 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 ALDH2P05091 517 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 ALOX12P18054 663 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 MAGEA6P43360 314 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 HCAR3P49019 387 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 MAPKAPK2P49137 400 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 GNG2P59768 71 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 MPP1Q00013 466 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 FCHO2Q0JRZ9 810 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 POLD3Q15054 466 aaPredicted RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 ZRANB3Q5FWF4 1079 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 KCTD13Q8WZ19 329 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 ZNF512Q96ME7 567 aaPredicted RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 OR52B2Q96RD2 323 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 MTG1Q9BT17 334 aaPredicted RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 TRMOQ9BU70 441 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 CINPQ9BW66 212 aaPredicted RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 RNF39Q9H2S5 420 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 PCDHGA10Q9Y5H3 936 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 SNX10Q9Y5X0 201 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 V9GYQ6 96 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 LTBP3Q9NS15 1303 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 NCF1BA6NI72 391 aaPredicted RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 OR5K4A6NMS3 321 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 NCF1CA8MVU1 366 aaPredicted RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 CCNT2O60583 730 aaKnown RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 ALBP02768 609 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 PABPC4LP0CB38 370 aaKnown RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 FCGR1AP12314 374 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 NCF1P14598 390 aaPredicted RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 OR1E1P30953 314 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 HARS2P49590 506 aaKnown RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 DIO1P49895 249 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 AFF1P51825 1210 aaKnown RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 NR1H2P55055 460 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 POU6F2P78424 691 aaPredicted RBP10.37□□□□□ -0.75
LIG1-220ENST00000601091 KCNJ8Q15842 424 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 ZNF423Q2M1K9 1284 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 ZNF618Q5T7W0 954 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 LNX2Q8N448 690 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 FBXO39Q8N4B4 442 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 ARRDC4Q8NCT1 418 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 IL17RDQ8NFM7 739 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 EPS8L2Q9H6S3 715 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 TAS2R13Q9NYV9 303 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 TRAF6Q9Y4K3 522 aa10.37□□□□□ -0.75
LIG1-220ENST00000601091 C1orf232A0A0U1RR37 186 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 A8MU76 341 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 F5H5T6 163 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 FAM189A1O60320 539 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 IPO13O94829 963 aaKnown RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 CCNA2P20248 432 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 OLIG2Q13516 323 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 SPIDRQ14159 915 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 SETMARQ53H47 684 aaPredicted RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 AADACL4Q5VUY2 407 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 FAM91A1Q658Y4 838 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 STEAP4Q687X5 459 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 EPGNQ6UW88 154 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 HFE2Q6ZVN8 426 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 ITIH5Q86UX2 942 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 DENND6AQ8IWF6 608 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 CEP19Q96LK0 163 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 SEC22CQ9BRL7 303 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 CCDC90BQ9GZT6 254 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 LIN28AQ9H9Z2 209 aaKnown RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 ATP13A1Q9HD20 1204 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 CHMP1AQ9HD42 196 aaPredicted RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 ENAMQ9NRM1 1142 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 MPP6Q9NZW5 540 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 HSFX1Q9UBD0 423 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 ZNF831Q5JPB2 1677 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms