RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 POT1Q9NUX5 634 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 C1orf232A0A0U1RR37 186 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 PDZK1P1A8MUH7 402 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 CLDN7O95471 211 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 PDGFAP04085 211 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 AMPD1P23109 780 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 PTPN4P29074 926 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 SPINT3P49223 89 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 ARL4DP49703 201 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 CCL11P51671 97 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 INPP5JQ15735 1006 aaPredicted RBP16.67■□□□□ 0.26
VPS29-204ENST00000548259 HENMT1Q5T8I9 393 aaKnown RBP16.67■□□□□ 0.26
VPS29-204ENST00000548259 CDKAL1Q5VV42 579 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 TIGD7Q6NT04 549 aaPredicted RBP16.67■□□□□ 0.26
VPS29-204ENST00000548259 KLHL35Q6PF15 583 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 POLNQ7Z5Q5 900 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 TEX26Q8N6G2 289 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 KLHL6Q8WZ60 621 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 HSPH1Q92598 858 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 CSPG4P5Q96PW8 444 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 MRPL47Q9HD33 250 aaKnown RBP16.67■□□□□ 0.26
VPS29-204ENST00000548259 OGFRQ9NZT2 677 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 AMACRQ9UHK6 382 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 CNOT6Q9ULM6 557 aaKnown RBP16.67■□□□□ 0.26
VPS29-204ENST00000548259 CHKBQ9Y259 395 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 TTLL3Q9Y4R7 772 aa16.67■□□□□ 0.26
VPS29-204ENST00000548259 KMOO15229 486 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 SLC25A14O95258 325 aaPredicted RBP16.66■□□□□ 0.26
VPS29-204ENST00000548259 VCLP18206 1134 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 NELFEP18615 380 aaKnown RBP16.66■□□□□ 0.26
VPS29-204ENST00000548259 CAPZBP47756 277 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 LEPRP48357 1165 aaKnown RBP16.66■□□□□ 0.26
VPS29-204ENST00000548259 ZNF165P49910 485 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 ACY1Q03154 408 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 UBXN1Q04323 297 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 TUBB3Q13509 450 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 NADK2Q4G0N4 442 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 TDRD12Q587J7 1177 aaKnown RBP16.66■□□□□ 0.26
VPS29-204ENST00000548259 ZNF569Q5MCW4 686 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 IRGCQ6NXR0 463 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 SIDT2Q8NBJ9 832 aaKnown RBP16.66■□□□□ 0.26
VPS29-204ENST00000548259 LPCAT1Q8NF37 534 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 PRR7Q8TB68 274 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 UBXN4Q92575 508 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 CXorf40BQ96DE9 158 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 RNF31Q96EP0 1072 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 TRIM11Q96F44 468 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 LYSMD1Q96S90 227 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 TRIM55Q9BYV6 548 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 ING2Q9H160 280 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 NUP62CLQ9H1M0 184 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 TRIM39Q9HCM9 518 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 RAD18Q9NS91 495 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.66■□□□□ 0.26
VPS29-204ENST00000548259 EPHA6Q9UF33 1036 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 PCYT1BQ9Y5K3 369 aaPredicted RBP16.66■□□□□ 0.26
VPS29-204ENST00000548259 ITPR2Q14571 2701 aa16.66■□□□□ 0.26
VPS29-204ENST00000548259 LGALS16A8MUM7 142 aa16.65■□□□□ 0.26
VPS29-204ENST00000548259 ATMINO43313 823 aaPredicted RBP16.65■□□□□ 0.26
VPS29-204ENST00000548259 SORBS2O94875 1100 aaKnown RBP16.65■□□□□ 0.26
VPS29-204ENST00000548259 SLC19A1P41440 591 aa16.65■□□□□ 0.26
VPS29-204ENST00000548259 EIF2S3LQ2VIR3 472 aaKnown RBP16.65■□□□□ 0.26
VPS29-204ENST00000548259 CCDC122Q5T0U0 273 aa16.65■□□□□ 0.26
VPS29-204ENST00000548259 PAPD7Q5XG87 772 aaKnown RBP16.65■□□□□ 0.26
VPS29-204ENST00000548259 FAM92BQ6ZTR7 304 aa16.65■□□□□ 0.26
VPS29-204ENST00000548259 CYP4V2Q6ZWL3 525 aaPredicted RBP16.65■□□□□ 0.26
VPS29-204ENST00000548259 TDRD1Q9BXT4 1180 aaKnown RBP16.65■□□□□ 0.26
VPS29-204ENST00000548259 ADGRE3Q9BY15 652 aa16.65■□□□□ 0.26
VPS29-204ENST00000548259 OR2AG1Q9H205 316 aa16.65■□□□□ 0.26
VPS29-204ENST00000548259 PCDH9Q9HC56 1237 aa16.65■□□□□ 0.26
VPS29-204ENST00000548259 MLXIPLQ9NP71 852 aa16.65■□□□□ 0.26
VPS29-204ENST00000548259 ETNK2Q9NVF9 386 aa16.65■□□□□ 0.26
VPS29-204ENST00000548259 TAS2R14Q9NYV8 317 aa16.65■□□□□ 0.26
VPS29-204ENST00000548259 ATXN10Q9UBB4 475 aa16.65■□□□□ 0.26
VPS29-204ENST00000548259 SLC30A1Q9Y6M5 507 aa16.65■□□□□ 0.26
VPS29-204ENST00000548259 ARGFXA6NJG6 315 aa16.64■□□□□ 0.25
VPS29-204ENST00000548259 FADS2P1A8MWK0 482 aa16.64■□□□□ 0.25
VPS29-204ENST00000548259 ZNF8P17098 575 aaPredicted RBP16.64■□□□□ 0.25
VPS29-204ENST00000548259 IDSP22304 550 aa16.64■□□□□ 0.25
VPS29-204ENST00000548259 HALP42357 657 aa16.64■□□□□ 0.25
VPS29-204ENST00000548259 KRT81Q14533 505 aa16.64■□□□□ 0.25
VPS29-204ENST00000548259 SMTNL2Q2TAL5 461 aa16.64■□□□□ 0.25
VPS29-204ENST00000548259 PDPK2PQ6A1A2 396 aa16.64■□□□□ 0.25
VPS29-204ENST00000548259 ALG1LQ6GMV1 187 aa16.64■□□□□ 0.25
VPS29-204ENST00000548259 LRRTM4Q86VH4 590 aa16.64■□□□□ 0.25
VPS29-204ENST00000548259 RHOT1Q8IXI2 618 aa16.64■□□□□ 0.25
VPS29-204ENST00000548259 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.64■□□□□ 0.25
VPS29-204ENST00000548259 ZSCAN5AQ9BUG6 496 aa16.64■□□□□ 0.25
VPS29-204ENST00000548259 MLPHQ9BV36 600 aaPredicted RBP16.64■□□□□ 0.25
VPS29-204ENST00000548259 SPATA16Q9BXB7 569 aa16.64■□□□□ 0.25
VPS29-204ENST00000548259 RAB33BQ9H082 229 aa16.64■□□□□ 0.25
VPS29-204ENST00000548259 MYO6Q9UM54 1294 aa16.64■□□□□ 0.25
VPS29-204ENST00000548259 FARSAQ9Y285 508 aaKnown RBP16.64■□□□□ 0.25
VPS29-204ENST00000548259 TCP11X1B4DZS4 312 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 MATN3O15232 486 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 FTLP02792 175 aaPredicted RBP16.63■□□□□ 0.25
VPS29-204ENST00000548259 KLK3P07288 261 aaPredicted RBP16.63■□□□□ 0.25
VPS29-204ENST00000548259 MYBL1P10243 752 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 ZNF7P17097 686 aaPredicted RBP16.63■□□□□ 0.25
VPS29-204ENST00000548259 CDK11BP21127 795 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms