RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CHRNB4P30926 498 aa9.15□□□□□ -0.95
LIMCH1-202ENST00000381753 ARL2P36404 184 aa9.15□□□□□ -0.95
LIMCH1-202ENST00000381753 AIF1P55008 147 aa9.15□□□□□ -0.95
LIMCH1-202ENST00000381753 LAPTM5Q13571 262 aa9.15□□□□□ -0.95
LIMCH1-202ENST00000381753 PTPN20Q4JDL3 420 aa9.15□□□□□ -0.95
LIMCH1-202ENST00000381753 CCNYL2Q5T2Q4 361 aa9.15□□□□□ -0.95
LIMCH1-202ENST00000381753 TMEM198Q66K66 360 aa9.15□□□□□ -0.95
LIMCH1-202ENST00000381753 SLC8B1Q6J4K2 584 aa9.15□□□□□ -0.95
LIMCH1-202ENST00000381753 C1orf210Q8IVY1 113 aa9.15□□□□□ -0.95
LIMCH1-202ENST00000381753 CENPLQ8N0S6 344 aaPredicted RBP9.15□□□□□ -0.95
LIMCH1-202ENST00000381753 DDX47Q9H0S4 455 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-202ENST00000381753 FLRT1Q9NZU1 646 aa9.15□□□□□ -0.95
LIMCH1-202ENST00000381753 MARK1Q9P0L2 795 aa9.15□□□□□ -0.95
LIMCH1-202ENST00000381753 GRID1Q9ULK0 1009 aa9.15□□□□□ -0.95
LIMCH1-202ENST00000381753 ISPDA4D126 451 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 XKRYO14609 159 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 ATXN7O15265 892 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 SLC28A2O43868 658 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 ALDOAP04075 364 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 MIPP30301 263 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 CCR10P46092 362 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 RAB33AQ14088 237 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 DEFB109BQ30KR1 87 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 TSSK4Q6SA08 328 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 C14orf80Q86SX3 495 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 AZIN2Q96A70 460 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 PHF21BQ96EK2 531 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 SPATA5L1Q9BVQ7 753 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 ERVK-5Q9HDB9 667 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 ANGPTL2Q9UKU9 493 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 RIMKLBQ9ULI2 386 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 SPIN1Q9Y657 262 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 CFAP20Q9Y6A4 193 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 RBMXL2O75526 392 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 PRAMEF1O95521 474 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 SFTPCP11686 197 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 HSD17B2P37059 387 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 RBM44Q6ZP01 1051 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 LONP2Q86WA8 852 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 PARP9Q8IXQ6 854 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 SLC39A11Q8N1S5 342 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 CADM2Q8N3J6 435 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 CKAP2Q8WWK9 683 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 LINGO1Q96FE5 620 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 KCNK16Q96T55 309 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 DPEP3Q9H4B8 488 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 KCNK12Q9HB15 430 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 ANGPT4Q9Y264 503 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 ITPKAP23677 461 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 PMS2P54278 862 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 NME5P56597 212 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 NAB2Q15742 525 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 MYLK3Q32MK0 819 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 HSDL2Q6YN16 418 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 C1orf186Q6ZWK4 172 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 C7orf43Q8WVR3 580 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 PNPLA2Q96AD5 504 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 HIC2Q96JB3 615 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 CCM2Q9BSQ5 444 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 MFRPQ9BY79 579 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 THAP2Q9H0W7 228 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 GLOD4Q9HC38 313 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 BLOC1S4Q9NUP1 217 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 BACE2Q9Y5Z0 518 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 C9IYK1 514 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 E7EQ34 232 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 SNRPB2P08579 225 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 NDUFV2P19404 249 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 HHEXQ03014 270 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 LSM12Q3MHD2 195 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 FAM153CQ494X1 144 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 TAPT1Q6NXT6 567 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 RTL10Q7L3V2 364 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 FGD2Q7Z6J4 655 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 OR4L1Q8NH43 312 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 THAP3Q8WTV1 239 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 ASB15Q8WXK1 588 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 CLCC1Q96S66 551 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 DYNLRB1Q9NP97 96 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 MRC1P22897 1456 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 A8MVJ9 347 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 CDC7O00311 574 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 USP12O75317 370 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 AKAP3O75969 853 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF682O95780 498 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 CACNG1Q06432 222 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 STX3Q13277 289 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 KCTD16Q68DU8 428 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 C22orf39Q6P5X5 142 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 SNX20Q7Z614 316 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 KAZALD1Q96I82 304 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 ZDHHC5Q9C0B5 715 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 ACTR5Q9H9F9 607 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 CDHR5Q9HBB8 845 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 HPF1Q9NWY4 346 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 MFHAS1Q9Y4C4 1052 aa9.14□□□□□ -0.95
LIMCH1-202ENST00000381753 ATRNL1Q5VV63 1379 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 TK2O00142 265 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 CAPN1P07384 714 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 LINGO3P0C6S8 592 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms