RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 ARHGAP1Q07960 439 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 GOLGA8FQ08AF8 430 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 HNRNPA0Q13151 305 aaKnown RBP3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 PPIGQ13427 754 aaKnown RBP eCLIP3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 SLC12A1Q13621 1099 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 IL13RA2Q14627 380 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 SHHQ15465 462 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 ODF3L2Q3SX64 289 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 SYTL3Q4VX76 610 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 WASHC2DQ5SRD0 308 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 C9orf50Q5SZB4 431 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 ARHGEF16Q5VV41 709 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 PARM1Q6UWI2 310 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 SLC16A12Q6ZSM3 486 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 GLCCI1Q86VQ1 547 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 ZNF713Q8N859 430 aaPredicted RBP3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 ZNF366Q8N895 744 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 LRRC57Q8N9N7 239 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 USP38Q8NB14 1042 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 OR6J1Q8NGC5 347 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 RNFT2Q96EX2 444 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 NEK1Q96PY6 1258 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 TEFMQ96QE5 360 aaKnown RBP3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 TWNKQ96RR1 684 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 WDR77Q9BQA1 342 aaPredicted RBP3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 MTG1Q9BT17 334 aaPredicted RBP3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 AGXT2Q9BYV1 514 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 B3GNT4Q9C0J1 378 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 ISCUQ9H1K1 167 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 VAT1LQ9HCJ6 419 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 RIC8AQ9NPQ8 531 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 SIRT3Q9NTG7 399 aaPredicted RBP3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 PLEKHB1Q9UF11 243 aaPredicted RBP3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 CDH22Q9UJ99 828 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 DHDHQ9UQ10 334 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 RAP2CQ9Y3L5 183 aa3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 DDX49Q9Y6V7 483 aaKnown RBP3.82□□□□□ -1.8
CKS1BP3-201ENST00000600888 COL6A3P12111 3177 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 RALGAPA2Q2PPJ7 1873 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 TRANK1O15050 2925 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 NID2Q14112 1375 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 VWA3AA6NCI4 1184 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 FAM90A10PA6NDY2 464 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 CCDC69A6NI79 296 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 HAS3O00219 553 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 MEIS2O14770 477 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 REC8O95072 547 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 NTN1O95631 604 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 MMP3P08254 477 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 CKMT1AP12532 417 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 UNGP13051 313 aaPredicted RBP3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 CASTP20810 708 aaKnown RBP3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 CCND2P30279 289 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 RFC2P35250 354 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 HNF1BP35680 557 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 CCT5P48643 541 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 RASSF2P50749 326 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 P2RX3P56373 397 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 EVCP57679 992 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 LINC00205P59089 165 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 DAB2IPQ5VWQ8 1189 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 GJB7Q6PEY0 223 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 PSRC1Q6PGN9 363 aaPredicted RBP3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 TMTC3Q6ZXV5 915 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 CHST3Q7LGC8 479 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 WDR5BQ86VZ2 330 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 CAMK1DQ8IU85 385 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 SRBD1Q8N5C6 995 aaKnown RBP3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 SETD9Q8NE22 299 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 ENGASEQ8NFI3 743 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 MYRIPQ8NFW9 859 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 PPTC7Q8NI37 304 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 HERVK_113Q902F9 699 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 RRP36Q96EU6 259 aaKnown RBP3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 INPP4AQ96PE3 977 aaPredicted RBP3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 REEP2Q9BRK0 252 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 NPLQ9BXD5 320 aaPredicted RBP3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 ALDH8A1Q9H2A2 487 aaPredicted RBP3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 RBM28Q9NW13 759 aaKnown RBP3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 MTMR10Q9NXD2 777 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 LUZP4Q9P127 313 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 HDAC6Q9UBN7 1215 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 SEC63Q9UGP8 760 aaKnown RBP3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 GDAQ9Y2T3 454 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 CKAP5Q14008 2032 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 BRWD1Q9NSI6 2320 aa3.81□□□□□ -1.8
CKS1BP3-201ENST00000600888 CHD9Q3L8U1 2897 aa3.8□□□□□ -1.8
CKS1BP3-201ENST00000600888 CDH23Q9H251 3354 aa3.8□□□□□ -1.8
CKS1BP3-201ENST00000600888 CCDC196A0A1B0GTZ2 297 aa3.8□□□□□ -1.8
CKS1BP3-201ENST00000600888 ESYT2A0FGR8 921 aa3.8□□□□□ -1.8
CKS1BP3-201ENST00000600888 OR6C68A6NDL8 312 aa3.8□□□□□ -1.8
CKS1BP3-201ENST00000600888 STMND1H3BQB6 276 aa3.8□□□□□ -1.8
CKS1BP3-201ENST00000600888 EIF3FO00303 357 aaPredicted RBP3.8□□□□□ -1.8
CKS1BP3-201ENST00000600888 KLK10O43240 276 aa3.8□□□□□ -1.8
CKS1BP3-201ENST00000600888 ZBTB43O43298 467 aa3.8□□□□□ -1.8
CKS1BP3-201ENST00000600888 FIBPO43427 364 aa3.8□□□□□ -1.8
CKS1BP3-201ENST00000600888 TSPAN3O60637 253 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms