RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 BOCQ9BWV1 1114 aa17.15■□□□□ 0.34
SHKBP1-212ENST00000596163 TMEM168Q9H0V1 697 aa17.15■□□□□ 0.34
SHKBP1-212ENST00000596163 CAAP1Q9H8G2 361 aa17.15■□□□□ 0.34
SHKBP1-212ENST00000596163 ETNK1Q9HBU6 452 aa17.15■□□□□ 0.34
SHKBP1-212ENST00000596163 TRIM39Q9HCM9 518 aa17.15■□□□□ 0.34
SHKBP1-212ENST00000596163 CNOT6Q9ULM6 557 aaKnown RBP17.15■□□□□ 0.34
SHKBP1-212ENST00000596163 SNX12Q9UMY4 172 aa17.15■□□□□ 0.34
SHKBP1-212ENST00000596163 GPSM3Q9Y4H4 160 aa17.15■□□□□ 0.34
SHKBP1-212ENST00000596163 GOLGA6L10A0A0M3HER8 536 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 GLYATL1P3A0A0U1RQE8 302 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 GPR89AB7ZAQ6 455 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 USP12O75317 370 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 GP1BAP07359 652 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 GPR89BP0CG08 455 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 TCP1P17987 556 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 LAMB3Q13751 1172 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 ITGA9Q13797 1035 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 LRP8Q14114 963 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 DENND5AQ6IQ26 1287 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 TRIM74Q86UV6 250 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 CHCHD4Q8N4Q1 142 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 ARL10Q8N8L6 244 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 FAM46DQ8NEK8 389 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 OR6C4Q8NGE1 309 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 ACTRT1Q8TDG2 376 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 GPBAR1Q8TDU6 330 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 VPS35Q96QK1 796 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 OR2M4Q96R27 311 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 SUDS3Q9H7L9 328 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 IL26Q9NPH9 171 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 RAB6BQ9NRW1 208 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 ZNHIT2Q9UHR6 403 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 APPL1Q9UKG1 709 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 PYCARDQ9ULZ3 195 aa17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 COL5A1P20908 1838 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-212ENST00000596163 USP27XA6NNY8 438 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 VEGFDO43915 354 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 CELA2BP08218 269 aaPredicted RBP17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 ADCY8P40145 1251 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 HADHAP40939 763 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 CDH17Q12864 832 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 OLIG2Q13516 323 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 SEMA5AQ13591 1074 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 PYCR3Q53H96 274 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 KCTD16Q68DU8 428 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 PPP1R21Q6ZMI0 780 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 NYAP1Q6ZVC0 841 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 MARK2Q7KZI7 788 aaKnown RBP17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 TAB3Q8N5C8 712 aaPredicted RBP17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 PRELID2Q8N945 189 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 DNAAF3Q8N9W5 541 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 NAT6Q93015 286 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 MAGOHBQ96A72 148 aaKnown RBP17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 GULP1Q9UBP9 304 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 PADI4Q9UM07 663 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 ARL5AQ9Y689 179 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 DNAH14Q0VDD8 3507 aa17.13■□□□□ 0.33
SHKBP1-212ENST00000596163 TP53BP1Q12888 1972 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 CPED1A4D0V7 1026 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 EME2A4GXA9 379 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 AP3B1O00203 1094 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 BUD23O43709 281 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 HYAL3O43820 417 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 NUAK1O60285 661 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 SUN1O94901 812 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 FUCA1P04066 466 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 ETS1P14921 441 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 RPL22P35268 128 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 KCNJ1P48048 391 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 CTBSQ01459 385 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 GTF2H3Q13889 308 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 TCEA2Q15560 299 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 LDLRAP1Q5SW96 308 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 OGFOD3Q6PK18 319 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 DHRS13Q6UX07 377 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 TMPRSS12Q86WS5 348 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 SLC35F3Q8IY50 421 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 OR4K2Q8NGD2 314 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 GDAP1Q8TB36 358 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 MS4A14Q96JA4 679 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 TTC25Q96NG3 672 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 SCNM1Q9BWG6 230 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 ZCCHC2Q9C0B9 1178 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 ABCG4Q9H172 646 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 DPEP2Q9H4A9 486 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 NEUROG3Q9Y4Z2 214 aa17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 OAS3Q9Y6K5 1087 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-212ENST00000596163 FAM221BA6H8Z2 402 aa17.11■□□□□ 0.33
SHKBP1-212ENST00000596163 DNAJC6O75061 913 aa17.11■□□□□ 0.33
SHKBP1-212ENST00000596163 MSLNQ13421 630 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-212ENST00000596163 CHRNA6Q15825 494 aa17.11■□□□□ 0.33
SHKBP1-212ENST00000596163 ATP13A5Q4VNC0 1218 aa17.11■□□□□ 0.33
SHKBP1-212ENST00000596163 FAM151BQ6UXP7 276 aa17.11■□□□□ 0.33
SHKBP1-212ENST00000596163 TMPRSS7Q7RTY8 843 aa17.11■□□□□ 0.33
SHKBP1-212ENST00000596163 EFL1Q7Z2Z2 1120 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-212ENST00000596163 IFI44Q8TCB0 444 aa17.11■□□□□ 0.33
SHKBP1-212ENST00000596163 ZNF398Q8TD17 642 aa17.11■□□□□ 0.33
SHKBP1-212ENST00000596163 COG1Q8WTW3 980 aa17.11■□□□□ 0.33
SHKBP1-212ENST00000596163 NAPGQ99747 312 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-212ENST00000596163 AP1M1Q9BXS5 423 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms