RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 LYPLAL1Q5VWZ2 237 aa14.65□□□□□ -0.06
SHKBP1-211ENST00000595945 ZNF549Q6P9A3 640 aa14.65□□□□□ -0.06
SHKBP1-211ENST00000595945 CERS6Q6ZMG9 384 aa14.65□□□□□ -0.06
SHKBP1-211ENST00000595945 NLRP8Q86W28 1048 aa14.65□□□□□ -0.06
SHKBP1-211ENST00000595945 SERPINA9Q86WD7 417 aa14.65□□□□□ -0.06
SHKBP1-211ENST00000595945 TRAM1L1Q8N609 369 aa14.65□□□□□ -0.06
SHKBP1-211ENST00000595945 ACMSDQ8TDX5 336 aa14.65□□□□□ -0.06
SHKBP1-211ENST00000595945 CXorf40AQ8TE69 158 aa14.65□□□□□ -0.06
SHKBP1-211ENST00000595945 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.65□□□□□ -0.06
SHKBP1-211ENST00000595945 CD84Q9UIB8 345 aa14.65□□□□□ -0.06
SHKBP1-211ENST00000595945 TMPRSS11EQ9UL52 423 aa14.65□□□□□ -0.06
SHKBP1-211ENST00000595945 VPS9D1Q9Y2B5 631 aa14.65□□□□□ -0.06
SHKBP1-211ENST00000595945 EML5Q05BV3 1969 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 IGLV3-16A0A075B6K0 115 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 FAM95CA0A1B0GW59 222 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 C10orf142B7Z368 130 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 TPP1O14773 563 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 RECQL5O94762 991 aaPredicted RBP14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 NR1D1P20393 614 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 RPS3P23396 243 aaKnown RBP eCLIP14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 ACRV1P26436 265 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 PMLP29590 882 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 ADARP55265 1226 aaKnown RBP14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 PPP2R2AP63151 447 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 ZXDAP98168 799 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 SFSWAPQ12872 951 aaKnown RBP14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 ITGA9Q13797 1035 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 ZKSCAN8Q15776 578 aaPredicted RBP14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 ATP13A5Q4VNC0 1218 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 TRIM67Q6ZTA4 783 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 TAS2R42Q7RTR8 314 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 KBTBD6Q86V97 674 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 C4orf33Q8N1A6 199 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 NXPE1Q8N323 547 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 BANPQ8N9N5 519 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 SCAMP4Q969E2 229 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 ULK4Q96C45 1275 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 ATXN7L3BQ96GX2 97 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 KLF6Q99612 283 aaPredicted RBP14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 OMDQ99983 421 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 ZSCAN5AQ9BUG6 496 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 RIOK2Q9BVS4 552 aaKnown RBP14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 P2RY12Q9H244 342 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 CHRDQ9H2X0 955 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 POLMQ9NP87 494 aaPredicted RBP14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 SNX15Q9NRS6 342 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 C2orf42Q9NWW7 574 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 MKS1Q9NXB0 559 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 USP36Q9P275 1121 aaKnown RBP14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 COQ6Q9Y2Z9 468 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 ANKRD12Q6UB98 2062 aa14.64□□□□□ -0.07
SHKBP1-211ENST00000595945 ZDBF2Q9HCK1 2354 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 NEMP1O14524 444 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 PFDN6O15212 129 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 PRPF4O43172 522 aaKnown RBP eCLIP14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 TYROBPO43914 113 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 NDUFS3O75489 264 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 IGLV3-19P01714 112 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 PYGBP11216 843 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 KRT4P19013 534 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 PTGER3P43115 390 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 RPS9P46781 194 aaKnown RBP14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 SERPINB8P50452 374 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 SLC18A1P54219 525 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 ADPRHP54922 357 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 TAS2R39P59534 338 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 TIAL1Q01085 375 aaKnown RBP eCLIP14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 POU4F1Q01851 419 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 DPTQ07507 201 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 MPP2Q14168 576 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 ITIH4Q14624 930 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 TMEM259Q4ZIN3 620 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 KIAA1324Q6UXG2 1013 aaKnown RBP14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 KDM7AQ6ZMT4 941 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 CMC1Q7Z7K0 106 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 PJA1Q8NG27 643 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 FAM76AQ8TAV0 307 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 ALKBH8Q96BT7 664 aaKnown RBP14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 AP2M1Q96CW1 435 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 NUS1Q96E22 293 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 CCDC97Q96F63 343 aaPredicted RBP14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 BIRC8Q96P09 236 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 VPS35Q96QK1 796 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 SMC6Q96SB8 1091 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 AARSD1Q9BTE6 412 aaKnown RBP14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 SPATA16Q9BXB7 569 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 CAB39LQ9H9S4 337 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 PREBQ9HCU5 417 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 KCTD5Q9NXV2 234 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 ZDHHC3Q9NYG2 299 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 EBF1Q9UH73 591 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 CRLS1Q9UJA2 301 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 SLC39A10Q9ULF5 831 aa14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 ZFR2Q9UPR6 939 aaKnown RBP14.63□□□□□ -0.07
SHKBP1-211ENST00000595945 CEP192Q8TEP8 1941 aa14.62□□□□□ -0.07
SHKBP1-211ENST00000595945 IGLON5A6NGN9 336 aa14.62□□□□□ -0.07
SHKBP1-211ENST00000595945 GOLGA8CPA6NN73 597 aa14.62□□□□□ -0.07
SHKBP1-211ENST00000595945 FADS2P1A8MWK0 482 aa14.62□□□□□ -0.07
SHKBP1-211ENST00000595945 LZTS3O60299 673 aaPredicted RBP14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms