RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 PIPSLA2A3N6 862 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 AGAP14A8MT82 685 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 DSCR3O14972 297 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 ALDOCP09972 364 aaKnown RBP4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 EGR2P11161 476 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 IL11P20809 199 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 MCCP23508 829 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 POU1F1P28069 291 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 NDUFS1P28331 727 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 AVPR1BP47901 424 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 AGTR2P50052 363 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 SLC37A1P57057 533 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 STARD6P59095 220 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 YWHAZP63104 245 aaKnown RBP4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 CNTN2Q02246 1040 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 SLC18A3Q16572 532 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 KRTAP19-4Q3LI73 84 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 CERKLQ49MI3 558 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 LY6G5CQ5SRR4 150 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 ZKSCAN2Q63HK3 967 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 KIRREL2Q6UWL6 708 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 KIAA1324Q6UXG2 1013 aaKnown RBP4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 KYAT3Q6YP21 454 aaKnown RBP4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 TADA2BQ86TJ2 420 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 TMEM200AQ86VY9 491 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 GHDCQ8N2G8 530 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 SLC9A6Q92581 669 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 HSPH1Q92598 858 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 HAS1Q92839 578 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 INTS12Q96CB8 462 aaKnown RBP4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 CNDP2Q96KP4 475 aaKnown RBP4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 FYTTD1Q96QD9 318 aaKnown RBP4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 H2AFJQ9BTM1 129 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 STRA6Q9BX79 667 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 TEX13BQ9BXU2 312 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 USP44Q9H0E7 712 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 ZCCHC4Q9H5U6 513 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 ZDHHC7Q9NXF8 308 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 SEMA5BQ9P283 1151 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 SLCO3A1Q9UIG8 710 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 CORO1CQ9ULV4 474 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 B3GNT3Q9Y2A9 372 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 PKP3Q9Y446 797 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 CABIN1Q9Y6J0 2220 aa4.88□□□□□ -1.63
HMGB1P23-201ENST00000518743 ARHGAP10A1A4S6 786 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 UNC119BA6NIH7 251 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 H7C0S8 307 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 VWA5AO00534 786 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 SCAMP1O15126 338 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 PRAMEF2O60811 474 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 TBCAO75347 108 aaKnown RBP4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 CNTN5O94779 1100 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 PDE8BO95263 885 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 MT-CO3P00414 261 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 ERBB2P04626 1255 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 HOXB5P09067 269 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 ELFN1P0C7U0 828 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 EEF1DP29692 281 aaKnown RBP4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 MPLP40238 635 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 EIF2DP41214 584 aaKnown RBP4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 B4GALNT1Q00973 533 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 CDC16Q13042 620 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 TP53BP2Q13625 1128 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 IL13RA2Q14627 380 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 RASA2Q15283 850 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 MLF2Q15773 248 aaPredicted RBP4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 SLC9B1Q4ZJI4 515 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 MTFR2Q6P444 385 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 KLHL35Q6PF15 583 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 IL20RBQ6UXL0 311 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 SLC46A3Q7Z3Q1 461 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 ARHGAP12Q8IWW6 846 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 UEVLDQ8IX04 471 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 ADGRF3Q8IZF5 1079 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 C17orf53Q8N3J3 647 aaPredicted RBP4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 LINC01465Q8N7H1 131 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 AMER2Q8N7J2 671 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 SH3RF3Q8TEJ3 882 aaPredicted RBP4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 SGCDQ92629 289 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 LOXL4Q96JB6 756 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 KLHL15Q96M94 604 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 MYADMQ96S97 322 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 PIP5K1AQ99755 562 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 THAP7Q9BT49 309 aaPredicted RBP4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 ABHD14AQ9BUJ0 271 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 WDR11Q9BZH6 1224 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 RABEP2Q9H5N1 569 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 CD248Q9HCU0 757 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 LTB4R2Q9NPC1 389 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 TMEM9BQ9NQ34 198 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 NCKIPSDQ9NZQ3 722 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 PEMTQ9UBM1 199 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 DKK3Q9UBP4 350 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 DDX49Q9Y6V7 483 aaKnown RBP4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 MYH15Q9Y2K3 1946 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 ATMQ13315 3056 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 C2orf16Q68DN1 1984 aa4.87□□□□□ -1.63
HMGB1P23-201ENST00000518743 NBEAL1Q6ZS30 2694 aa4.86□□□□□ -1.63
HMGB1P23-201ENST00000518743 MYH1P12882 1939 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms