RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CCDC162PA2VCL2 907 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 TLR4O00206 839 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 KHNYNO15037 678 aaKnown RBP14.86□□□□□ -0.03
NUP54-213ENST00000513352 VILLO15195 856 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 SLC25A14O95258 325 aaPredicted RBP14.86□□□□□ -0.03
NUP54-213ENST00000513352 VAPBO95292 243 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 ASMTLO95671 621 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 SOD1P00441 154 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 GOT2P00505 430 aaKnown RBP14.86□□□□□ -0.03
NUP54-213ENST00000513352 POLBP06746 335 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 HTR1BP28222 390 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 PFN3P60673 137 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 YPEL5P62699 121 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 TUBB4BP68371 445 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 CDK3Q00526 305 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 OVGP1Q12889 678 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 PEX6Q13608 980 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 PTK2BQ14289 1009 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 NFATC4Q14934 902 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 FASTKD3Q14CZ7 662 aaKnown RBP14.86□□□□□ -0.03
NUP54-213ENST00000513352 ANKRD20A4Q4UJ75 823 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 PEAR1Q5VY43 1037 aaPredicted RBP14.86□□□□□ -0.03
NUP54-213ENST00000513352 CAPN12Q6ZSI9 719 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 IQCHQ86VS3 1027 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 PHYKPLQ8IUZ5 450 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 FBXO36Q8NEA4 188 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 ZNF398Q8TD17 642 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 PEX13Q92968 403 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 GLYATL1Q969I3 302 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 FUBP1Q96AE4 644 aaKnown RBP14.86□□□□□ -0.03
NUP54-213ENST00000513352 LRRC39Q96DD0 335 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 HIC2Q96JB3 615 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 FMO2Q99518 471 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 FAM129AQ9BZQ8 928 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 GDF3Q9NR23 364 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 ZDHHC18Q9NUE0 388 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 ZC3H7BQ9UGR2 993 aaKnown RBP14.86□□□□□ -0.03
NUP54-213ENST00000513352 NFU1Q9UMS0 254 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 SLC6A14Q9UN76 642 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 GPR179Q6PRD1 2367 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 VPS13AQ96RL7 3174 aa14.86□□□□□ -0.03
NUP54-213ENST00000513352 KNL1Q8NG31 2342 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 BHMG1C9JSJ3 638 aaPredicted RBP14.85□□□□□ -0.03
NUP54-213ENST00000513352 GAPDHSO14556 408 aaPredicted RBP14.85□□□□□ -0.03
NUP54-213ENST00000513352 TOR1BO14657 336 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 EIF3HO15372 352 aaKnown RBP eCLIP14.85□□□□□ -0.03
NUP54-213ENST00000513352 USP1O94782 785 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 MYCLP1P12525 358 aaPredicted RBP14.85□□□□□ -0.03
NUP54-213ENST00000513352 KELP23276 732 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 TEAD1P28347 426 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 AKT1P31749 480 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 TRIM23P36406 574 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 KIAA1024LP59773 190 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 XIAPP98170 497 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 CACNG1Q06432 222 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 SPEM2Q0P670 501 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 NFATC2Q13469 925 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 FASTKD1Q53R41 847 aaKnown RBP14.85□□□□□ -0.03
NUP54-213ENST00000513352 ARMC3Q5W041 872 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 PDPK2PQ6A1A2 396 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 TCEAL6Q6IPX3 200 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 ENPP7Q6UWV6 458 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 SNX20Q7Z614 316 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 NLRP8Q86W28 1048 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 DCP2Q8IU60 420 aaKnown RBP14.85□□□□□ -0.03
NUP54-213ENST00000513352 IGDCC3Q8IVU1 814 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 GPR161Q8N6U8 529 aaKnown RBP14.85□□□□□ -0.03
NUP54-213ENST00000513352 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.85□□□□□ -0.03
NUP54-213ENST00000513352 PYROXD1Q8WU10 500 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 TCEAL3Q969E4 200 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 ULK4Q96C45 1275 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 WDR92Q96MX6 357 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 C19orf43Q9BQ61 176 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 NAT9Q9BTE0 207 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 GTPBP2Q9BX10 602 aaKnown RBP14.85□□□□□ -0.03
NUP54-213ENST00000513352 LGR4Q9BXB1 951 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 TEX101Q9BY14 249 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 FOXP3Q9BZS1 431 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 TREX1Q9NSU2 369 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 IL1RAPL1Q9NZN1 696 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 KLQ9UEF7 1012 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 TMEM98Q9Y2Y6 226 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 SNX11Q9Y5W9 270 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 PLXNB3Q9ULL4 1909 aa14.85□□□□□ -0.03
NUP54-213ENST00000513352 TDRD6O60522 2096 aaKnown RBP14.85□□□□□ -0.03
NUP54-213ENST00000513352 CACNA1EQ15878 2313 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 TMEM131Q92545 1883 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 E7ESA3 106 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 H7C0S8 307 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 MTX2O75431 263 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 TTC4O95801 387 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 SYPP08247 313 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 PRSS56P0CW18 603 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 CDKN1CP49918 316 aaPredicted RBP14.84□□□□□ -0.03
NUP54-213ENST00000513352 ATXN3P54252 364 aaPredicted RBP14.84□□□□□ -0.03
NUP54-213ENST00000513352 NXPH1P58417 271 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 ACVR1Q04771 509 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 GRIK2Q13002 908 aa14.84□□□□□ -0.03
NUP54-213ENST00000513352 THOC5Q13769 683 aaKnown RBP14.84□□□□□ -0.03
NUP54-213ENST00000513352 CRYMQ14894 314 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms