RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 HLA-DPA1P20036 260 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 AK4P27144 223 aaPredicted RBP11.12□□□□□ -0.63
RFFL-204ENST00000414419 HMGCLP35914 325 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 ACTR1BP42025 376 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 DCDC1P59894 354 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 ACTR1AP61163 376 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 LRP8Q14114 963 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 RTP5Q14D33 572 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 SLC1A5Q15758 541 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 ISXQ2M1V0 245 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 PYCR3Q53H96 274 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 SIRPB2Q5JXA9 342 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 ZNF569Q5MCW4 686 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 ANKRD20A2Q5SQ80 823 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 CERCAMQ5T4B2 595 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 ANKRD20A1Q5TYW2 823 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 ANKRD20A3Q5VUR7 823 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 ZDHHC20Q5W0Z9 365 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 PDPK2PQ6A1A2 396 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 KDELC1Q6UW63 502 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 LSMEM2Q8N112 164 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 TRAM1L1Q8N609 369 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 Q8N9G6 341 aaPredicted RBP11.12□□□□□ -0.63
RFFL-204ENST00000414419 GPR26Q8NDV2 337 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 BLOC1S5Q8TDH9 187 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 SCARF2Q96GP6 870 aaPredicted RBP11.12□□□□□ -0.63
RFFL-204ENST00000414419 MRGPRX2Q96LB1 330 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 PPP1R2P1Q96PQ5 205 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 GFM1Q96RP9 751 aaKnown RBP11.12□□□□□ -0.63
RFFL-204ENST00000414419 WDR24Q96S15 920 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 FAM118BQ9BPY3 351 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 HERPUD2Q9BSE4 406 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 GBA3Q9H227 469 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 BPIFA1Q9NP55 256 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 SPATS2LQ9NUQ6 558 aaKnown RBP11.12□□□□□ -0.63
RFFL-204ENST00000414419 AAR2Q9Y312 384 aaKnown RBP11.12□□□□□ -0.63
RFFL-204ENST00000414419 PCDHB1Q9Y5F3 818 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 ADGRG1Q9Y653 693 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 DMXL2Q8TDJ6 3036 aa11.12□□□□□ -0.63
RFFL-204ENST00000414419 TMX2-CTNND1H3BSU7 103 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 TAF4O00268 1085 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 DDX3YO15523 660 aaKnown RBP11.11□□□□□ -0.63
RFFL-204ENST00000414419 NUDT21O43809 227 aaKnown RBP11.11□□□□□ -0.63
RFFL-204ENST00000414419 NOBOXO60393 691 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 FGF1P05230 155 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 RPLP0P05388 317 aaKnown RBP11.11□□□□□ -0.63
RFFL-204ENST00000414419 CCDC175P0C221 793 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 PNLIPP16233 465 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 BPIP17213 487 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 ACTN2P35609 894 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 GABREP78334 506 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 CCL7P80098 99 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 HLTFQ14527 1009 aaKnown RBP eCLIP11.11□□□□□ -0.63
RFFL-204ENST00000414419 SEL1L2Q5TEA6 688 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 CHST15Q7LFX5 561 aaPredicted RBP11.11□□□□□ -0.63
RFFL-204ENST00000414419 GLT6D1Q7Z4J2 308 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 NRROSQ86YC3 692 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 PHYKPLQ8IUZ5 450 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 CCNJLQ8IV13 435 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 PTCD2Q8WV60 388 aaKnown RBP11.11□□□□□ -0.63
RFFL-204ENST00000414419 EID2BQ96D98 161 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 OXNAD1Q96HP4 312 aaPredicted RBP11.11□□□□□ -0.63
RFFL-204ENST00000414419 HES6Q96HZ4 224 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 PLEKHG4BQ96PX9 1271 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 ALS2CR12Q96Q35 445 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 CARD9Q9H257 536 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 LRRN3Q9H3W5 708 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 TRIM39Q9HCM9 518 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.11□□□□□ -0.63
RFFL-204ENST00000414419 APPL1Q9UKG1 709 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 CNOT6Q9ULM6 557 aaKnown RBP11.11□□□□□ -0.63
RFFL-204ENST00000414419 RAXQ9Y2V3 346 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 PKP3Q9Y446 797 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 SPO11Q9Y5K1 396 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 OAS3Q9Y6K5 1087 aaKnown RBP11.11□□□□□ -0.63
RFFL-204ENST00000414419 CAPN6Q9Y6Q1 641 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 RNF215Q9Y6U7 377 aa11.11□□□□□ -0.63
RFFL-204ENST00000414419 ASPMQ8IZT6 3477 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 GPR89AB7ZAQ6 455 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 NTN3O00634 580 aaPredicted RBP11.1□□□□□ -0.63
RFFL-204ENST00000414419 AURKAO14965 403 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 STX7O15400 261 aaKnown RBP11.1□□□□□ -0.63
RFFL-204ENST00000414419 RRP8O43159 456 aaKnown RBP11.1□□□□□ -0.63
RFFL-204ENST00000414419 GRID2O43424 1007 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 NUAK1O60285 661 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 BRINP1O60477 761 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 DNAJC6O75061 913 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 ECEL1O95672 775 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 AGTP01019 485 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 MPOP05164 745 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 GPR89BP0CG08 455 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 PSMB4P28070 264 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 RBMS1P29558 406 aaKnown RBP11.1□□□□□ -0.63
RFFL-204ENST00000414419 ALDH4A1P30038 563 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 CHRNA4P43681 627 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 LSSP48449 732 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 PPM1FP49593 454 aaPredicted RBP11.1□□□□□ -0.63
RFFL-204ENST00000414419 MAZP56270 477 aaKnown RBP11.1□□□□□ -0.63
RFFL-204ENST00000414419 GTF2H3Q13889 308 aa11.1□□□□□ -0.63
RFFL-204ENST00000414419 C3orf38Q5JPI3 329 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms