RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CCDC197Q8NCU1 140 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 GPT2Q8TD30 523 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 ADAMTS15Q8TE58 950 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 DNASE1L2Q92874 299 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 FER1L6-AS2Q96M78 137 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 POLG2Q9UHN1 485 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 SCOCQ9UIL1 159 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 STXBP5LQ9Y2K9 1186 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 KLHL20Q9Y2M5 609 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 SNX5Q9Y5X3 404 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 DCDC2BA2VCK2 349 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 C16orf96A6NNT2 1141 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 CYB5AP00167 134 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TMEM253P0C7T8 217 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 MPSTP25325 297 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 OAS2P29728 719 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 RPL3P39023 403 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 CLCN7P51798 805 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 MRPL49Q13405 166 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 RAPSNQ13702 412 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TLR1Q15399 786 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 IQCCQ4KMZ1 466 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 CEACAM20Q6UY09 585 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 RASSF6Q6ZTQ3 369 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 SNX32Q86XE0 403 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 ZNF483Q8TF39 744 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 DCAKDQ8WVC6 231 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 MMABQ96EY8 250 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 HES7Q9BYE0 225 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 RHOBTB2Q9BYZ6 727 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 FOXQ1Q9C009 403 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 AGO3Q9H9G7 860 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 PLCL2Q9UPR0 1127 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 PCDHGB5Q9Y5G0 923 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 FAM187AA6NFU0 413 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 FAM220BPB1ANY3 271 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 COL9A1P20849 921 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 ZNF132P52740 706 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 CDH15P55291 814 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 SLC7A5Q01650 507 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 PLEKHG4Q58EX7 1191 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 KIAA0895LQ68EN5 471 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 FAM92BQ6ZTR7 304 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 ADHFE1Q8IWW8 467 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 FAM160A2Q8N612 972 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 SLC9A6Q92581 669 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 GRAMD1AQ96CP6 724 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 THOC1Q96FV9 657 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 PPP1R10Q96QC0 940 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 AARSD1Q9BTE6 412 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 GPR62Q9BZJ7 368 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 NOL6Q9H6R4 1146 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 ABCB6Q9NP58 842 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 COL20A1Q9P218 1284 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 KIF13AQ9H1H9 1805 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 TM9SF1O15321 606 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 DDX3YO15523 660 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 SNRPAP09012 282 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 ARSAP15289 507 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 CNR2P34972 360 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 FEN1P39748 380 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 ZNF41P51814 821 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 EPHA4P54764 986 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 RPS24P62847 133 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 GTF2BQ00403 316 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 SLC18A3Q16572 532 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 PDPK2PQ6A1A2 396 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 ADGRG6Q86SQ4 1221 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 FAM126BQ8IXS8 530 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 SCAMP5Q8TAC9 235 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 RBM12Q9NTZ6 932 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 TAS2R14Q9NYV8 317 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 GLS2Q9UI32 602 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 PCDHGC5Q9Y5F6 944 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 TOPAZ1Q8N9V7 1692 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 TRPC5OSA6NMA1 111 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 CHADO15335 359 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 INSIG1O15503 277 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 PRKCGP05129 697 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 CCNA2P20248 432 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 OR4D2P58180 307 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 MYBPC1Q00872 1141 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 TBX2Q13207 712 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 LRP8Q14114 963 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 INPP5AQ14642 412 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 PITRM1Q5JRX3 1037 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 RPTNQ6XPR3 784 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 POLNQ7Z5Q5 900 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 VSTM4Q8IW00 320 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 OR5B17Q8NGF7 314 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 OR2T34Q8NGX1 318 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 CPT1BQ92523 772 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 NDRG1Q92597 394 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 FATE1Q969F0 183 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 GMLQ99445 158 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 MRPL1Q9BYD6 325 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 MYLK2Q9H1R3 596 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 PCDHGC4Q9Y5F7 938 aa9.15□□□□□ -0.94
LIMCH1-202ENST00000381753 MID1O15344 667 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms