RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 CNOT8Q9UFF9 292 aaKnown RBP16.81■□□□□ 0.28
VPS29-204ENST00000548259 ST14Q9Y5Y6 855 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 ARHGEF17Q96PE2 2063 aaPredicted RBP16.81■□□□□ 0.28
VPS29-204ENST00000548259 ASMTLO95671 621 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 ERCC2P18074 760 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 RPL7AP62424 266 aaKnown RBP16.8■□□□□ 0.28
VPS29-204ENST00000548259 FOXM1Q08050 763 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 TCP11X2Q5H9J9 407 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 PPP1R15BQ5SWA1 713 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 ERMARDQ5T6L9 678 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 ARMC12Q5T9G4 340 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 MON1BQ7L1V2 547 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 CBARPQ8N350 705 aaPredicted RBP16.8■□□□□ 0.28
VPS29-204ENST00000548259 EXD1Q8NHP7 514 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 SSC4DQ8WTU2 575 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 SEC14L1Q92503 715 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 STAMBPL1Q96FJ0 436 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 GANQ9H2C0 597 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 APMAPQ9HDC9 416 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 NLRC4Q9NPP4 1024 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 KLHL3Q9UH77 587 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 ZNHIT2Q9UHR6 403 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 TMEM98Q9Y2Y6 226 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 PLEKHM1Q9Y4G2 1056 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 ANKRD36A6QL64 1941 aa16.8■□□□□ 0.28
VPS29-204ENST00000548259 RP1L1Q8IWN7 2480 aaPredicted RBP16.79■□□□□ 0.28
VPS29-204ENST00000548259 UTP20O75691 2785 aaKnown RBP16.79■□□□□ 0.28
VPS29-204ENST00000548259 CREBBPQ92793 2442 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 KIR2DS5A0A0G2JLQ3 304 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 A0A0G2JNG1 304 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 OR5K4A6NMS3 321 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 KIR2DS3K7RE56 304 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 KATNA1O75449 491 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 RNF8O76064 485 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 CCNYL3P0C7X3 344 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 LHCGRP22888 699 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 SLC10A7Q0GE19 358 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 ERV3-1Q14264 604 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 KIR2DS5Q14953 304 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 PPP6R3Q5H9R7 873 aaPredicted RBP16.79■□□□□ 0.28
VPS29-204ENST00000548259 ATP1A1-AS1Q5TC04 95 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 PPP1R2P3Q6NXS1 205 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 ZNF765Q7L2R6 523 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 NLRP8Q86W28 1048 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 PSTKQ8IV42 348 aaKnown RBP16.79■□□□□ 0.28
VPS29-204ENST00000548259 ARHGAP12Q8IWW6 846 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 PTCD2Q8WV60 388 aaKnown RBP16.79■□□□□ 0.28
VPS29-204ENST00000548259 MCCC1Q96RQ3 725 aaPredicted RBP16.79■□□□□ 0.28
VPS29-204ENST00000548259 PCDHB18PQ96TA0 734 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 CUEDC1Q9NWM3 386 aaPredicted RBP16.79■□□□□ 0.28
VPS29-204ENST00000548259 GPATCH2LQ9NWQ4 482 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 CROTQ9UKG9 612 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 DNPEPQ9ULA0 475 aa16.79■□□□□ 0.28
VPS29-204ENST00000548259 NPIPB15A6NHN6 443 aaPredicted RBP16.78■□□□□ 0.28
VPS29-204ENST00000548259 PRPSAP2O60256 369 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 RECKO95980 971 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 ANKRD34CP0C6C1 535 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 CCDC172P0C7W6 258 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 ZNF30P17039 623 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 NR1D1P20393 614 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 PSMA2P25787 234 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 PMS2P54278 862 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 JAM2P57087 298 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 IL11RAQ14626 422 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 CAPRIN2Q6IMN6 1127 aaKnown RBP16.78■□□□□ 0.28
VPS29-204ENST00000548259 LYSMD3Q7Z3D4 306 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 TECPR1Q7Z6L1 1165 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 RASGRP3Q8IV61 690 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 CPT1CQ8TCG5 803 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 PCMTD1Q96MG8 357 aaPredicted RBP16.78■□□□□ 0.28
VPS29-204ENST00000548259 ZWILCHQ9H900 591 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 RMI1Q9H9A7 625 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 NOD2Q9HC29 1040 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 PARVAQ9NVD7 372 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 VPS18Q9P253 973 aa16.78■□□□□ 0.28
VPS29-204ENST00000548259 MRPS18BQ9Y676 258 aaKnown RBP16.78■□□□□ 0.28
VPS29-204ENST00000548259 PIPSLA2A3N6 862 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 TOX3O15405 576 aaPredicted RBP16.77■□□□□ 0.28
VPS29-204ENST00000548259 PGLSO95336 258 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 MT-ND3P03897 115 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 CASP14P31944 242 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 HCAR3P49019 387 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 EPHB1P54762 984 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 UBE2HP62256 183 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 CT47A1Q5JQC4 288 aaPredicted RBP16.77■□□□□ 0.28
VPS29-204ENST00000548259 IYDQ6PHW0 289 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 ARHGAP36Q6ZRI8 547 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 CHST15Q7LFX5 561 aaPredicted RBP16.77■□□□□ 0.28
VPS29-204ENST00000548259 PHYKPLQ8IUZ5 450 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 NPWQ8N729 165 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 MGME1Q9BQP7 344 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 TWSG1Q9GZX9 223 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 ABCG8Q9H221 673 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 HAUS2Q9NVX0 235 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 TAB2Q9NYJ8 693 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 PCSK1NQ9UHG2 260 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 CD84Q9UIB8 345 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 TLK1Q9UKI8 766 aa16.77■□□□□ 0.28
VPS29-204ENST00000548259 TCRBV5S1A1TA0A578 114 aa16.76■□□□□ 0.27
VPS29-204ENST00000548259 CDC14CA4D256 554 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms