RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 DGKQP52824 942 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 ZBTB17Q13105 803 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 PSAPL1Q6NUJ1 521 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 ZNF100Q8IYN0 542 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 DQX1Q8TE96 717 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 ABHD5Q8WTS1 349 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 CSPG4P5Q96PW8 444 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 NAT9Q9BTE0 207 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 ATG10Q9H0Y0 220 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 DDX18Q9NVP1 670 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 PIH1D1Q9NWS0 290 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 ROBO3Q96MS0 1386 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 HAX1O00165 279 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 AKAP10O43572 662 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 POLR2CP19387 275 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 IL10P22301 178 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 PPP2R2AP63151 447 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 ZNF33AQ06730 810 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 AUHQ13825 339 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 MFSD7Q6UXD7 560 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 PAQR7Q86WK9 346 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 FAM81AQ8TBF8 368 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 METTL6Q8TCB7 284 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 CLP1Q92989 425 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 RAB7BQ96AH8 199 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 MS4A4AQ96JQ5 239 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 PNPLA8Q9NP80 782 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 ABHD10Q9NUJ1 306 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 USE1Q9NZ43 259 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 SMG5Q9UPR3 1016 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 PTRH2Q9Y3E5 179 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 C2orf74A8MZ97 194 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 UPK3BL1B0FP48 263 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TISP43B9A030 160 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 UPK3BL2E5RIL1 263 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 KRT8P05787 483 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 CCNFP41002 786 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 HSF2Q03933 536 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 AMIGO3Q86WK7 504 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 ZMIZ2Q8NF64 920 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 RAD51AP1Q96B01 352 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 ADAM33Q9BZ11 813 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 ULBP3Q9BZM4 244 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TRABDQ9H4I3 376 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TIGARQ9NQ88 270 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 NECTIN3Q9NQS3 549 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 SEMA3GQ9NS98 782 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 UPB1Q9UBR1 384 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 L1RE1Q9UN81 338 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 CFL2Q9Y281 166 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TMEM98Q9Y2Y6 226 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 ACOT9Q9Y305 439 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TNPO3Q9Y5L0 923 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 DCLK1O15075 740 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TBX18O95935 607 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 CD46P15529 392 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 CSNK1EP49674 416 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 PLP2Q04941 152 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 PTPRNQ16849 979 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TCEAL6Q6IPX3 200 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 KIAA1161Q6NSJ0 714 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 DTWD2Q8NBA8 298 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 AGBL5Q8NDL9 886 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 MIEF2Q96C03 454 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 PRMT1Q99873 361 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 RIOK2Q9BVS4 552 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 SEMA4AQ9H3S1 761 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 EXD2Q9NVH0 621 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 RGS14O43566 566 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 B4GALT2O60909 372 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 NR2F1P10589 423 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 SRFP11831 508 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 VIPR1P32241 457 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 FUT11Q495W5 492 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 VPS26BQ4G0F5 336 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 NUP54Q7Z3B4 507 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 KCNMB4Q86W47 210 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TEX9Q8N6V9 391 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 ZSCAN4Q8NAM6 433 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 PROX1Q92786 737 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TRGV8A0A0C4DH27 118 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 ZNF726A6NNF4 738 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 AP3D1O14617 1153 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 PKMP14618 531 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 HNRNPA2B1P22626 353 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 PON1P27169 355 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 RPL10P27635 214 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 IFNGR2P38484 337 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 GALK2Q01415 458 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 SRYQ05066 204 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TSGA10IPQ3SY00 556 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 ATG14Q6ZNE5 492 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TMPPEQ6ZT21 453 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 C3orf62Q6ZUJ4 267 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 DCP2Q8IU60 420 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TMC8Q8IU68 726 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 SLC22A9Q8IVM8 553 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 RNF168Q8IYW5 571 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 TMEM132CQ8N3T6 1108 aa9.16□□□□□ -0.94
LIMCH1-202ENST00000381753 NKAPQ8N5F7 415 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms