RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 PPIL1Q9Y3C6 166 aa13.41□□□□□ -0.26
VPS28-210ENST00000529182 HS3ST3A1Q9Y663 406 aa13.41□□□□□ -0.26
VPS28-210ENST00000529182 ASCC3Q8N3C0 2202 aaKnown RBP13.41□□□□□ -0.26
VPS28-210ENST00000529182 A0A0J9YYE9 177 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 FPGTO14772 594 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 TM4SF5O14894 197 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 PMPCBO75439 489 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 HEXIM1O94992 359 aaKnown RBP13.4□□□□□ -0.26
VPS28-210ENST00000529182 TRBC1P01850 177 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 PCCBP05166 539 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 CYP2A6P11509 494 aaPredicted RBP13.4□□□□□ -0.26
VPS28-210ENST00000529182 CXCR5P32302 372 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 QPCTQ16769 361 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 ZNF569Q5MCW4 686 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 CRTC1Q6UUV9 634 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 KYAT3Q6YP21 454 aaKnown RBP13.4□□□□□ -0.26
VPS28-210ENST00000529182 USP45Q70EL2 814 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 SLC35F6Q8N357 371 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 TTC13Q8NBP0 860 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 PLA2G15Q8NCC3 412 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 OXNAD1Q96HP4 312 aaPredicted RBP13.4□□□□□ -0.26
VPS28-210ENST00000529182 VAT1Q99536 393 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 GORASP1Q9BQQ3 440 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 RTKNQ9BST9 563 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 USP29Q9HBJ7 922 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 TM7SF3Q9NS93 570 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 RSPH14Q9UHP6 348 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 DNPEPQ9ULA0 475 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 CNOT1A5YKK6 2376 aaKnown RBP13.4□□□□□ -0.26
VPS28-210ENST00000529182 LRRK1Q38SD2 2015 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 TMEM131Q92545 1883 aa13.4□□□□□ -0.26
VPS28-210ENST00000529182 SPTBN2O15020 2390 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 CFAP69A5D8W1 941 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 CAPN8A6NHC0 703 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 MAGEC1O60732 1142 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 PIRTP0C851 137 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 CD59P13987 128 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 ETV3P41162 512 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 GDF10P55107 478 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 CDK18Q07002 472 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 CCDC173Q0VFZ6 552 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 OVGP1Q12889 678 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 PUM1Q14671 1186 aaKnown RBP eCLIP13.39□□□□□ -0.27
VPS28-210ENST00000529182 LRRC14Q15048 493 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 SHBQ15464 509 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 ANKRD20A2Q5SQ80 823 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 ANKRD20A1Q5TYW2 823 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 ANKRD20A3Q5VUR7 823 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 LRRC66Q68CR7 880 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 KDELC1Q6UW63 502 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 RFLNAQ6ZTI6 216 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 HSD11B1LQ7Z5J1 315 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 NDUFAF2Q8N183 169 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 PELI3Q8N2H9 469 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 FAM71DQ8N9W8 422 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 SLC35B2Q8TB61 432 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 CCDC110Q8TBZ0 833 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 UBE2Q2Q8WVN8 375 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 C1orf54Q8WWF1 131 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 COQ10AQ96MF6 247 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 FCRL5Q96RD9 977 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 ELF4Q99607 663 aaPredicted RBP13.39□□□□□ -0.27
VPS28-210ENST00000529182 FERMT1Q9BQL6 677 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 C1QTNF7Q9BXJ2 289 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 FAM153AQ9UHL3 310 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 TRHDEQ9UKU6 1024 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 CABIN1Q9Y6J0 2220 aa13.39□□□□□ -0.27
VPS28-210ENST00000529182 TP53BP1Q12888 1972 aaPredicted RBP13.38□□□□□ -0.27
VPS28-210ENST00000529182 A0A1B0GTQ1 180 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 ANKRD66B4E2M5 251 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 CEP104O60308 925 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 CLDN7O95471 211 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 ATP1A1P05023 1023 aaKnown RBP13.38□□□□□ -0.27
VPS28-210ENST00000529182 C1SP09871 688 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 SDHBP21912 280 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 KCNA4P22459 653 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 NFKBIAP25963 317 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 PSMB4P28070 264 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 RABIFP47224 123 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 CCT8P50990 548 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 WNT3AP56704 352 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 PFN3P60673 137 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 RPL26P61254 145 aaKnown RBP13.38□□□□□ -0.27
VPS28-210ENST00000529182 PTSQ03393 145 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 BNIP3Q12983 259 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 SNX1Q13596 522 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 PDE1CQ14123 709 aaPredicted RBP13.38□□□□□ -0.27
VPS28-210ENST00000529182 ARHGEF7Q14155 803 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 INPP5AQ14642 412 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 AGERQ15109 404 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 SIX1Q15475 284 aaPredicted RBP13.38□□□□□ -0.27
VPS28-210ENST00000529182 SLC14A2Q15849 920 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 ZNF542PQ5EBM4 170 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 NYAP1Q6ZVC0 841 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 GATAD2AQ86YP4 633 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 CBARPQ8N350 705 aaPredicted RBP13.38□□□□□ -0.27
VPS28-210ENST00000529182 DEFB124Q8NES8 71 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 NUS1Q96E22 293 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 IFT43Q96FT9 208 aa13.38□□□□□ -0.27
VPS28-210ENST00000529182 MRGPRX2Q96LB1 330 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms