RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 A0A1W2PPM1 405 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 CAPN8A6NHC0 703 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 C2orf81A6NN90 581 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 SPECC1L-ADORA2AF8WAN1 911 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 ASGR2P07307 311 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 PSMA3P25788 255 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 CTHP32929 405 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 HNF1BP35680 557 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 BMPR2Q13873 1038 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 CDKN3Q16667 212 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 LEXMQ3ZCV2 418 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 C9orf64Q5T6V5 341 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 OR4K2Q8NGD2 314 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 ACOX2Q99424 681 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 CPNE1Q99829 537 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 NLE1Q9NVX2 485 aaPredicted RBP18.65■□□□□ 0.58
CLN3-206ENST00000360019 POLR3BQ9NW08 1133 aaPredicted RBP18.65■□□□□ 0.58
CLN3-206ENST00000360019 PHTF1Q9UMS5 762 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 STARD13Q9Y3M8 1113 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 EDDM13A0A1B0GTR0 161 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 SLC7A4O43246 635 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 SIN3BO75182 1162 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 RPP40O75818 363 aaKnown RBP18.65■□□□□ 0.58
CLN3-206ENST00000360019 LPOP22079 712 aaPredicted RBP18.65■□□□□ 0.58
CLN3-206ENST00000360019 GP5P40197 560 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 NEPROQ6NW34 567 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 LYSMD3Q7Z3D4 306 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 STRA8Q7Z7C7 330 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 DENND6AQ8IWF6 608 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 LRIG1Q96JA1 1093 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 LYSMD1Q96S90 227 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 MCMBPQ9BTE3 642 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 TRABDQ9H4I3 376 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 SUDS3Q9H7L9 328 aaPredicted RBP18.65■□□□□ 0.58
CLN3-206ENST00000360019 HEBP1Q9NRV9 189 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 CACNA2D2Q9NY47 1150 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 PPIL1Q9Y3C6 166 aa18.65■□□□□ 0.58
CLN3-206ENST00000360019 OR51F1A6NGY5 319 aa18.64■□□□□ 0.57
CLN3-206ENST00000360019 NPIPB15A6NHN6 443 aaPredicted RBP18.64■□□□□ 0.57
CLN3-206ENST00000360019 K7EQS6 105 aa18.64■□□□□ 0.57
CLN3-206ENST00000360019 SERPINB9P50453 376 aa18.64■□□□□ 0.57
CLN3-206ENST00000360019 PRAMEP78395 509 aa18.64■□□□□ 0.57
CLN3-206ENST00000360019 THOC5Q13769 683 aaKnown RBP18.64■□□□□ 0.57
CLN3-206ENST00000360019 NUDT18Q6ZVK8 323 aa18.64■□□□□ 0.57
CLN3-206ENST00000360019 STK40Q8N2I9 435 aa18.64■□□□□ 0.57
CLN3-206ENST00000360019 OR6P1Q8NGX9 317 aa18.64■□□□□ 0.57
CLN3-206ENST00000360019 SCRN2Q96FV2 425 aa18.64■□□□□ 0.57
CLN3-206ENST00000360019 CDKN2AIPNLQ96HQ2 116 aa18.64■□□□□ 0.57
CLN3-206ENST00000360019 MCCC1Q96RQ3 725 aaPredicted RBP18.64■□□□□ 0.57
CLN3-206ENST00000360019 OSBPL1AQ9BXW6 950 aa18.64■□□□□ 0.57
CLN3-206ENST00000360019 MFSD1Q9H3U5 465 aa18.64■□□□□ 0.57
CLN3-206ENST00000360019 TXNDC16Q9P2K2 825 aa18.64■□□□□ 0.57
CLN3-206ENST00000360019 ACTL7BQ9Y614 415 aa18.64■□□□□ 0.57
CLN3-206ENST00000360019 MYO10Q9HD67 2058 aa18.64■□□□□ 0.57
CLN3-206ENST00000360019 A0A1W2PQ67 120 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 TSPAN11A1L157 253 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 CCDC162PA2VCL2 907 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 TRIM49D1C9J1S8 452 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 KRT37O76014 449 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 KRT38O76015 456 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 GOT2P00505 430 aaKnown RBP18.63■□□□□ 0.57
CLN3-206ENST00000360019 SNRPAP09012 282 aaKnown RBP18.63■□□□□ 0.57
CLN3-206ENST00000360019 GABRB3P28472 473 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 HMGCLP35914 325 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 SLC1A2P43004 574 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 PPP2R2AP63151 447 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 PPARDQ03181 441 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 CTBP1Q13363 440 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 LRRC73Q5JTD7 316 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 IER5LQ5T953 404 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 GRTP1Q5TC63 336 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 MROH9Q5TGP6 573 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 ZNF470Q6ECI4 717 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 PTCRAQ6ISU1 281 aaPredicted RBP18.63■□□□□ 0.57
CLN3-206ENST00000360019 BRAT1Q6PJG6 821 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 KDM7AQ6ZMT4 941 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 TAOK1Q7L7X3 1001 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 PTAR1Q7Z6K3 402 aaPredicted RBP18.63■□□□□ 0.57
CLN3-206ENST00000360019 SUGP1Q8IWZ8 645 aaKnown RBP18.63■□□□□ 0.57
CLN3-206ENST00000360019 PNPLA1Q8N8W4 532 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 RBBP8Q99708 897 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 FAM167BQ9BTA0 163 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 GPR63Q9BZJ6 419 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 IL17CQ9P0M4 197 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 SARDHQ9UL12 918 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 PIAS3Q9Y6X2 628 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 C1orf232A0A0U1RR37 186 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 NARSO43776 548 aaKnown RBP18.63■□□□□ 0.57
CLN3-206ENST00000360019 HNRNPLP14866 589 aaKnown RBP eCLIP18.63■□□□□ 0.57
CLN3-206ENST00000360019 TNFRSF4P43489 277 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 KIR2DL1P43626 348 aaPredicted RBP18.63■□□□□ 0.57
CLN3-206ENST00000360019 ABCG1P45844 678 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 ATP1A2P50993 1020 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 CBX1P83916 185 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 MPP1Q00013 466 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 PDE1BQ01064 536 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 SEMG2Q02383 582 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 ELAVL3Q14576 367 aaKnown RBP18.63■□□□□ 0.57
CLN3-206ENST00000360019 LGSNQ5TDP6 509 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 TSPAN33Q86UF1 283 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms