RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 SERPINI2O75830 405 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 SUPT7LO94864 414 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 CLPTM1O96005 669 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 ME2P23368 584 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 SEMA5AQ13591 1074 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 PCBP1Q15365 356 aaKnown RBP eCLIP10.48□□□□□ -0.73
LIG1-220ENST00000601091 PLEKHG4Q58EX7 1191 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 WSCD1Q658N2 575 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 IQSEC1Q6DN90 963 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 ZFP1Q6P2D0 407 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 ZNF574Q6ZN55 896 aaPredicted RBP10.48□□□□□ -0.73
LIG1-220ENST00000601091 KRT74Q7RTS7 529 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 PLEKHH3Q7Z736 793 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 ZNF527Q8NB42 609 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 OR6Y1Q8NGX8 325 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 USP13Q92995 863 aaPredicted RBP10.48□□□□□ -0.73
LIG1-220ENST00000601091 CNBD2Q96M20 576 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 PEBP4Q96S96 227 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 SLC4A5Q9BY07 1137 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 TKTL2Q9H0I9 626 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 GPAMQ9HCL2 828 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 CYP4F12Q9HCS2 524 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 ABI2Q9NYB9 513 aaPredicted RBP10.48□□□□□ -0.73
LIG1-220ENST00000601091 STMN3Q9NZ72 180 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 VPS51Q9UID3 782 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 FBXL21Q9UKT6 434 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 IGKV6D-21A0A0A0MT36 114 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 RGSL1A5PLK6 1076 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 NFKBIEO00221 500 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 AKAP10O43572 662 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 SERPINB7O75635 380 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 C2P06681 752 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 USP17L7P0C7H9 530 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 T-ENOLP0DO92 83 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 ODC1P11926 461 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 PRKCHP24723 683 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 PTPN5P54829 565 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 CSHL1Q14406 222 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 ZNF235Q14590 738 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 PPM1JQ5JR12 505 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 TIGD7Q6NT04 549 aaPredicted RBP10.48□□□□□ -0.73
LIG1-220ENST00000601091 FAM122CQ6P4D5 195 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 CCDC185Q8N715 623 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 RNF148Q8N7C7 305 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 OLIG1Q8TAK6 271 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 PHF12Q96QT6 1004 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 MIPEPQ99797 713 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 C19orf43Q9BQ61 176 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 CCDC106Q9BWC9 280 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 DUSP16Q9BY84 665 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 ARHGEF4Q9NR80 690 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 NRAPQ86VF7 1730 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 NRCAMQ92823 1304 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 MFSD11O43934 449 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 SRP72O76094 671 aaKnown RBP10.48□□□□□ -0.73
LIG1-220ENST00000601091 RBP1P09455 135 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 TFE3P19532 575 aaPredicted RBP10.48□□□□□ -0.73
LIG1-220ENST00000601091 EEF1B2P24534 225 aaKnown RBP10.48□□□□□ -0.73
LIG1-220ENST00000601091 CRABP2P29373 138 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 ADRA1BP35368 520 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 GSSP48637 474 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 ARHGDIAP52565 204 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 ATXN1P54253 815 aaKnown RBP10.48□□□□□ -0.73
LIG1-220ENST00000601091 MINDY4Q4G0A6 757 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 MARK2Q7KZI7 788 aaKnown RBP10.48□□□□□ -0.73
LIG1-220ENST00000601091 TAS2R42Q7RTR8 314 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 PYROXD2Q8N2H3 581 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 SHCBP1Q8NEM2 672 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 INTS12Q96CB8 462 aaKnown RBP10.48□□□□□ -0.73
LIG1-220ENST00000601091 METTL2AQ96IZ6 378 aaKnown RBP10.48□□□□□ -0.73
LIG1-220ENST00000601091 ZNF333Q96JL9 665 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 SENP8Q96LD8 212 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 NXF3Q9H4D5 531 aaKnown RBP10.48□□□□□ -0.73
LIG1-220ENST00000601091 SDHAF3Q9NRP4 125 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 AK5Q9Y6K8 562 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 COL1A2P08123 1366 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.47□□□□□ -0.73
LIG1-220ENST00000601091 A6NL46 340 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 TMEM114B3SHH9 223 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 DAB1O75553 588 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 FGFR1P11362 822 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 NFKB1P19838 968 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 GRIA1P42261 906 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 COTL1Q14019 142 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 INPP5AQ14642 412 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 ARHGAP17Q68EM7 881 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 PGM2L1Q6PCE3 622 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 MPP5Q8N3R9 675 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 ENDOVQ8N8Q3 282 aaKnown RBP10.47□□□□□ -0.73
LIG1-220ENST00000601091 UNKQ9C0B0 810 aaKnown RBP10.47□□□□□ -0.73
LIG1-220ENST00000601091 COG4Q9H9E3 785 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 USP29Q9HBJ7 922 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 SIRT5Q9NXA8 310 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 ADAMTS5Q9UNA0 930 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 POLHQ9Y253 713 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 RAP2CQ9Y3L5 183 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 CCDC162PA2VCL2 907 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 FAM159BA6NKW6 160 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 ATP6V1G2-DDX39BF2Z307 99 aa10.47□□□□□ -0.73
LIG1-220ENST00000601091 PDHXO00330 501 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms