RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 VIPR1P32241 457 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 RABIFP47224 123 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 PEX5P50542 639 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 NXPH1P58417 271 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 RPL26P61254 145 aaKnown RBP13.06□□□□□ -0.32
CLK3-224ENST00000568605 ZBTB17Q13105 803 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 ARHGEF7Q14155 803 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 NOMO1Q15155 1222 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 SLC14A2Q15849 920 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 ZNF423Q2M1K9 1284 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 GCNT7Q6ZNI0 430 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 ABI3BPQ7Z7G0 1075 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 ZC3H18Q86VM9 953 aaKnown RBP13.06□□□□□ -0.32
CLK3-224ENST00000568605 ZSWIM9Q86XI8 627 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.06□□□□□ -0.32
CLK3-224ENST00000568605 ALG3Q92685 438 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 HES6Q96HZ4 224 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 AGAP3Q96P47 875 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 ELF4Q99607 663 aaPredicted RBP13.06□□□□□ -0.32
CLK3-224ENST00000568605 ERVMER34-1Q9H9K5 563 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 PACSIN2Q9UNF0 486 aaPredicted RBP13.06□□□□□ -0.32
CLK3-224ENST00000568605 RPL26L1Q9UNX3 145 aaKnown RBP13.06□□□□□ -0.32
CLK3-224ENST00000568605 PPP2R2CQ9Y2T4 447 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 PCDHGB2Q9Y5G2 931 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 CACNA1AO00555 2505 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 TTC24A2A3L6 582 aaPredicted RBP13.05□□□□□ -0.32
CLK3-224ENST00000568605 H7C0C1 242 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 PSMD11O00231 422 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 ZSCAN12O43309 604 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 MMP20O60882 483 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 WNT1P04628 370 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 CSRP1P21291 193 aaKnown RBP13.05□□□□□ -0.32
CLK3-224ENST00000568605 KCNA4P22459 653 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 CD86P42081 329 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 ATP5OP48047 213 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 LIG3P49916 1009 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 THOP1P52888 689 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 OTUD4Q01804 1114 aaKnown RBP13.05□□□□□ -0.32
CLK3-224ENST00000568605 BNC1Q01954 994 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 LRRC14Q15048 493 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 AGERQ15109 404 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 TEX44Q53QW1 395 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 ERMP1Q7Z2K6 904 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 OR2I1PQ8NGU4 316 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 ARRDC2Q8TBH0 407 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 ACTL9Q8TC94 416 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 LRRN4Q8WUT4 740 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 HTR3CQ8WXA8 447 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 ADGRE3Q9BY15 652 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 CEP41Q9BYV8 373 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 SLC25A51Q9H1U9 297 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 PCDH9Q9HC56 1237 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 KLHL8Q9P2G9 620 aaPredicted RBP13.05□□□□□ -0.32
CLK3-224ENST00000568605 SAE1Q9UBE0 346 aaPredicted RBP13.05□□□□□ -0.32
CLK3-224ENST00000568605 B4GALT6Q9UBX8 382 aa13.05□□□□□ -0.32
CLK3-224ENST00000568605 FNDC3AQ9Y2H6 1198 aaKnown RBP13.05□□□□□ -0.32
CLK3-224ENST00000568605 PTPRBP23467 1997 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 A0A1B0GTQ1 180 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 H0Y8X5 98 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 H3BM21 787 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 WNT9AO14904 365 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 DDX3YO15523 660 aaKnown RBP13.04□□□□□ -0.32
CLK3-224ENST00000568605 PCDHGA12O60330 932 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 PYGMP11217 842 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 ZNF30P17039 623 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 MSNP26038 577 aaKnown RBP13.04□□□□□ -0.32
CLK3-224ENST00000568605 PTPN3P26045 913 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 IGFALSP35858 605 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 NOVA1P51513 510 aaKnown RBP13.04□□□□□ -0.32
CLK3-224ENST00000568605 EIF3EP60228 445 aaKnown RBP13.04□□□□□ -0.32
CLK3-224ENST00000568605 YPEL5P62699 121 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 ADCY2Q08462 1091 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 RALGDSQ12967 914 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 ZNF211Q13398 564 aaPredicted RBP13.04□□□□□ -0.32
CLK3-224ENST00000568605 PTK2BQ14289 1009 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 FGL2Q14314 439 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 ACOX1Q15067 660 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 RPS6KA1Q15418 735 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 ITPRIPL1Q6GPH6 555 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 CCDC70Q6NSX1 233 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 LIPIQ6XZB0 460 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 NAXDQ8IW45 347 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 LPCAT1Q8NF37 534 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 OR13H1Q8NG92 308 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 ATL2Q8NHH9 583 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 LRRC45Q96CN5 670 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 IFT43Q96FT9 208 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 SCRN2Q96FV2 425 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 IMP4Q96G21 291 aaKnown RBP13.04□□□□□ -0.32
CLK3-224ENST00000568605 TEKT5Q96M29 485 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 PPP1R2P1Q96PQ5 205 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 MCCC1Q96RQ3 725 aaPredicted RBP13.04□□□□□ -0.32
CLK3-224ENST00000568605 KLF6Q99612 283 aaPredicted RBP13.04□□□□□ -0.32
CLK3-224ENST00000568605 CARD9Q9H257 536 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 TRHDEQ9UKU6 1024 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 CA5BQ9Y2D0 317 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 COQ6Q9Y2Z9 468 aa13.04□□□□□ -0.32
CLK3-224ENST00000568605 GOLGA4Q13439 2230 aaKnown RBP13.04□□□□□ -0.32
CLK3-224ENST00000568605 ARID1BQ8NFD5 2236 aaPredicted RBP13.04□□□□□ -0.32
CLK3-224ENST00000568605 A0A0J9YYE9 177 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 105.2 ms