RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 UGCGQ16739 394 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 TRIM68Q6AZZ1 485 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 DENND1BQ6P3S1 775 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 GDPD4Q6W3E5 623 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 SIRT2Q8IXJ6 389 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 CNDP2Q96KP4 475 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 TBCBQ99426 244 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 PARVBQ9HBI1 364 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 COMMD8Q9NX08 183 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 SNTNA6NMZ2 147 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 CPNE6O95741 557 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 KRT4P19013 534 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 CD6P30203 668 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 KCNMA1Q12791 1236 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 LRRC8EQ6NSJ5 796 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 MIER2Q8N344 545 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 BRSK1Q8TDC3 778 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 RLN3Q8WXF3 142 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 ANKRD6Q9Y2G4 727 aa9.24□□□□□ -0.93
LIMCH1-202ENST00000381753 FAM234BA2RU67 622 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 TMEM191CA6NGB0 347 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 CCDC188H7C350 402 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 TRAFD1O14545 582 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 B3GALT2O43825 422 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 MMP20O60882 483 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 PSMD10O75832 226 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 CCDC159P0C7I6 412 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 ITGB5P18084 799 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 MAXP61244 160 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 ACSM2AQ08AH3 577 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 XKR6Q5GH73 641 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 MORN1Q5T089 497 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 ACSM2BQ68CK6 577 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 BHLHB9Q6PI77 547 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 TMEM220Q6QAJ8 160 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 LRRC49Q8IUZ0 686 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 SRFBP1Q8NEF9 429 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 ZNF398Q8TD17 642 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 ZNF606Q8WXB4 792 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 TOE1Q96GM8 510 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 MYCBPQ99417 103 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 RC3H2Q9HBD1 1191 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 TMEM63CQ9P1W3 806 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 BAIAP2L1Q9UHR4 511 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 FBXO2Q9UK22 296 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 PLAGL2Q9UPG8 496 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 TBC1D30Q9Y2I9 924 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 STON1Q9Y6Q2 735 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 CIB4A0PJX0 185 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 SDR42E2A6NKP2 422 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 CYTH3O43739 400 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 TOP3BO95985 862 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 GIMD1P0DJR0 217 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 SPAM1P38567 509 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 TTPAP49638 278 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 C2orf54Q08AI8 447 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 GPAT3Q53EU6 434 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 CAPN13Q6MZZ7 669 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 FAM171BQ6P995 826 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 SH3RF1Q7Z6J0 888 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 ATXN2LQ8WWM7 1075 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 WDR92Q96MX6 357 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 CYTH2Q99418 400 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 KCNE2Q9Y6J6 123 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 POLR1AO95602 1720 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 ZNF865P0CJ78 1059 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 ID4P47928 161 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 DENND6AQ8IWF6 608 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 TC2NQ8N9U0 490 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 OR10H5Q8NGA6 315 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 RNF31Q96EP0 1072 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 MRPS30Q9NP92 439 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 WASF2Q9Y6W5 498 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 TCRBV5S4A2TA0A5A2 114 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 CXCR3P49682 368 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 VSNL1P62760 191 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 NTHL1P78549 312 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 GCNT1Q02742 428 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 SPARCL1Q14515 664 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 MILR1Q7Z6M3 343 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 SERINC5Q86VE9 423 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 PEX5LQ8IYB4 626 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 SLC35F6Q8N357 371 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 TNIP2Q8NFZ5 429 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 KCNE4Q8WWG9 221 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 RUBCNQ92622 972 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 CDADC1Q9BWV3 514 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 ELL3Q9HB65 397 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 IL21RQ9HBE5 538 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 RRAGDQ9NQL2 400 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 SPHK2Q9NRA0 654 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 SDHAF3Q9NRP4 125 aa9.23□□□□□ -0.93
LIMCH1-202ENST00000381753 A0A1B0GTW7 788 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 DAB1O75553 588 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 C22orf31O95567 290 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 PIRTP0C851 137 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 NQO1P15559 274 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 SOX11P35716 441 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 RABIFP47224 123 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms