RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 NEBLO76041 1014 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 C6P13671 934 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 HTR1BP28222 390 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 SERPINB6P35237 376 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 RPIAP49247 311 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 PPARDQ03181 441 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 LBRQ14739 615 aaKnown RBP19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 WSCD2Q2TBF2 565 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 TPRG1LQ5T0D9 272 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 ALKBH5Q6P6C2 394 aaKnown RBP19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 LRRC49Q8IUZ0 686 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 PHACTR4Q8IZ21 702 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 BBS5Q8N3I7 341 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 TPCN2Q8NHX9 752 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 CPLX3Q8WVH0 158 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 SPOCK2Q92563 424 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 THAP2Q9H0W7 228 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 ABCG4Q9H172 646 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 RCOR3Q9P2K3 495 aaPredicted RBP19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 APOBEC3BQ9UH17 382 aaKnown RBP19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 ANAPC7Q9UJX3 599 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 AK5Q9Y6K8 562 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 A0A087WV48 116 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 A0A087X0T9 212 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 LY6G6EA0A0G2JKS1 128 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 LMO7DNF2Z398 122 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 LZTS3O60299 673 aaPredicted RBP19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 FAM228BP0C875 321 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 RARAP10276 462 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 NFKBIAP25963 317 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 RGRP47804 291 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 LIG3P49916 1009 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 SCNN1BP51168 640 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 IRF4Q15306 451 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 NFKBIBQ15653 356 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 HADHQ16836 314 aaKnown RBP19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 SMTNL2Q2TAL5 461 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 SKOR2Q2VWA4 1001 aaPredicted RBP19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 PRRT3Q5FWE3 981 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 RALGPS1Q5JS13 557 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 FAXCQ5TGI0 409 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 CDCP2Q5VXM1 449 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 ARHGAP36Q6ZRI8 547 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 FSTL5Q8N475 847 aaPredicted RBP19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 PAF1Q8N7H5 531 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 NSMCE1Q8WV22 266 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 HSPH1Q92598 858 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 CSPG4P5Q96PW8 444 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 DEPDC7Q96QD5 511 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 NUP85Q9BW27 656 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 IFNKQ9P0W0 207 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 LCMT1Q9UIC8 334 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 U3KQA8 63 aa19.2■□□□□ 0.66
CCDC28A-203ENST00000617445 TRAFD1O14545 582 aaPredicted RBP19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 GYPCP04921 128 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 ANXA6P08133 673 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 AMPD1P23109 780 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 HNRNPH3P31942 346 aaKnown RBP19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 CLDN6P56747 220 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 MTM1Q13496 603 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 ZNF235Q14590 738 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 CCDC122Q5T0U0 273 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 LVRNQ6Q4G3 990 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 SCG3Q8WXD2 468 aaKnown RBP19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 GRAMD1AQ96CP6 724 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 APOOQ9BUR5 198 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 BOCQ9BWV1 1114 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 KCTD5Q9NXV2 234 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 COQ6Q9Y2Z9 468 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 LAMA5O15230 3695 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 RP1P56715 2156 aa19.19■□□□□ 0.66
CCDC28A-203ENST00000617445 ITPR1Q14643 2758 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 EME2A4GXA9 379 aaPredicted RBP19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 SOCS5O75159 536 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 ALPIP09923 528 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 HK3P52790 923 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 ADKP55263 362 aaKnown RBP19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 CDH6P55285 790 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 SLC25A11Q02978 314 aaKnown RBP19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 SLC10A7Q0GE19 358 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 INPP5AQ14642 412 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 NFATC4Q14934 902 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 ELOCQ15369 112 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 NR0B2Q15466 257 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 DEFB133Q30KQ1 61 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 DPPA4Q7L190 304 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 ZSWIM9Q86XI8 627 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 IFI44Q8TCB0 444 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 NAT6Q93015 286 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 LRRC61Q9BV99 259 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 PCDH18Q9HCL0 1135 aa19.18■□□□□ 0.66
CCDC28A-203ENST00000617445 MUSKO15146 869 aa19.17■□□□□ 0.66
CCDC28A-203ENST00000617445 HTRA2O43464 458 aaPredicted RBP19.17■□□□□ 0.66
CCDC28A-203ENST00000617445 MAFKO60675 156 aa19.17■□□□□ 0.66
CCDC28A-203ENST00000617445 GCATO75600 419 aa19.17■□□□□ 0.66
CCDC28A-203ENST00000617445 RASGRP1O95267 797 aa19.17■□□□□ 0.66
CCDC28A-203ENST00000617445 HOXC4P09017 264 aaPredicted RBP19.17■□□□□ 0.66
CCDC28A-203ENST00000617445 ELFN1P0C7U0 828 aa19.17■□□□□ 0.66
CCDC28A-203ENST00000617445 TCF4P15884 667 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms