RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 TMCC1O94876 653 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 CPNE6O95741 557 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 LSM8O95777 96 aaKnown RBP17.06■□□□□ 0.32
VPS29-204ENST00000548259 CDH5P33151 784 aaPredicted RBP17.06■□□□□ 0.32
VPS29-204ENST00000548259 FLT3P36888 993 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 CCR10P46092 362 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 KCNAB2Q13303 367 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 CLCA4Q14CN2 919 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 INO80DQ53TQ3 878 aaPredicted RBP17.06■□□□□ 0.32
VPS29-204ENST00000548259 XYLT1Q86Y38 959 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 IRF2BP1Q8IU81 584 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 IL22RA1Q8N6P7 574 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 TBC1D31Q96DN5 1066 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 HMCESQ96FZ2 354 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 CFAP57Q96MR6 1250 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 FUCA2Q9BTY2 467 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 ANAPC2Q9UJX6 822 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 DNAJC12Q9UKB3 198 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 OR1A2Q9Y585 309 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 LRRK2Q5S007 2527 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 FLNCQ14315 2725 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 B4DGG1 531 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 PDE2AO00408 941 aaPredicted RBP17.05■□□□□ 0.32
VPS29-204ENST00000548259 FOXN3O00409 490 aaPredicted RBP17.05■□□□□ 0.32
VPS29-204ENST00000548259 HGSO14964 777 aaPredicted RBP17.05■□□□□ 0.32
VPS29-204ENST00000548259 CAPN5O15484 640 aaPredicted RBP17.05■□□□□ 0.32
VPS29-204ENST00000548259 PCCBP05166 539 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 PON1P27169 355 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 ADRA1BP35368 520 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 CLCN1P35523 988 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 ETV5P41161 510 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 ATP11AP98196 1134 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 C1QBPQ07021 282 aaKnown RBP17.05■□□□□ 0.32
VPS29-204ENST00000548259 SERINC3Q13530 473 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 TSR1Q2NL82 804 aaKnown RBP17.05■□□□□ 0.32
VPS29-204ENST00000548259 LEKR1Q6ZMV7 388 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 PTRH1Q86Y79 214 aaKnown RBP17.05■□□□□ 0.32
VPS29-204ENST00000548259 SLITRK4Q8IW52 837 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 OR56A4Q8NGH8 313 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 HTR3CQ8WXA8 447 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 TAAR9Q96RI9 348 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 COQ6Q9Y2Z9 468 aa17.05■□□□□ 0.32
VPS29-204ENST00000548259 RHPN2P1A8MT19 583 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 BIN1O00499 593 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 TNFRSF10CO14798 259 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 POLE2P56282 527 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 PEX6Q13608 980 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 AGERQ15109 404 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 UGP2Q16851 508 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 BRAT1Q6PJG6 821 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 BNIPLQ7Z465 357 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 NLRP14Q86W24 1093 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 FAM71AQ8IYT1 594 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 PAF1Q8N7H5 531 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 PDXPQ96GD0 296 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 NDFIP2Q9NV92 336 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 TMEM59LQ9UK28 342 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 DAAM1Q9Y4D1 1078 aa17.04■□□□□ 0.32
VPS29-204ENST00000548259 ITIH2P19823 946 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 BMP6P22004 513 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 SDC4P31431 198 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 CASRP41180 1078 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 MTIF2P46199 727 aaKnown RBP17.03■□□□□ 0.32
VPS29-204ENST00000548259 LIG3P49916 1009 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 KIAA1024LP59773 190 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 APBA1Q02410 837 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 TRA2AQ13595 282 aaKnown RBP eCLIP17.03■□□□□ 0.32
VPS29-204ENST00000548259 HLTFQ14527 1009 aaKnown RBP eCLIP17.03■□□□□ 0.32
VPS29-204ENST00000548259 CDO1Q16878 200 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 AMZ1Q400G9 498 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 ARTNQ5T4W7 220 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 MANEALQ5VSG8 457 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 SPECC1LQ69YQ0 1117 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 DNAAF5Q86Y56 855 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 JPH3Q8WXH2 748 aaPredicted RBP17.03■□□□□ 0.32
VPS29-204ENST00000548259 ZNF641Q96N77 438 aaPredicted RBP17.03■□□□□ 0.32
VPS29-204ENST00000548259 SLC12A9Q9BXP2 914 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 ASPSCR1Q9BZE9 553 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 CDH19Q9H159 772 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 EPN3Q9H201 632 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 SEMA6CQ9H3T2 930 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 SUV39H2Q9H5I1 410 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 PCDH12Q9NPG4 1184 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 DONSONQ9NYP3 566 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 PCDHGA3Q9Y5H0 932 aa17.03■□□□□ 0.32
VPS29-204ENST00000548259 DOPEY2Q9Y3R5 2298 aa17.02■□□□□ 0.32
VPS29-204ENST00000548259 CFAP69A5D8W1 941 aa17.02■□□□□ 0.32
VPS29-204ENST00000548259 ZNF891A8MT65 544 aaPredicted RBP17.02■□□□□ 0.32
VPS29-204ENST00000548259 LRIG2O94898 1065 aa17.02■□□□□ 0.32
VPS29-204ENST00000548259 PLEKP08567 350 aaPredicted RBP17.02■□□□□ 0.32
VPS29-204ENST00000548259 PRKCSHP14314 528 aaPredicted RBP17.02■□□□□ 0.32
VPS29-204ENST00000548259 CYP11B1P15538 503 aa17.02■□□□□ 0.32
VPS29-204ENST00000548259 WT1P19544 449 aaPredicted RBP17.02■□□□□ 0.32
VPS29-204ENST00000548259 CR2P20023 1033 aa17.02■□□□□ 0.32
VPS29-204ENST00000548259 ALDH4A1P30038 563 aa17.02■□□□□ 0.32
VPS29-204ENST00000548259 YBEYP58557 167 aaPredicted RBP17.02■□□□□ 0.32
VPS29-204ENST00000548259 FOXK1P85037 733 aa17.02■□□□□ 0.32
VPS29-204ENST00000548259 RAPGEF1Q13905 1077 aa17.02■□□□□ 0.32
VPS29-204ENST00000548259 C16orf72Q14CZ0 275 aa17.02■□□□□ 0.32
VPS29-204ENST00000548259 AGBL5Q8NDL9 886 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 174.8 ms