RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 CETN2P41208 172 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 GRIA4P48058 902 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 ATXN3P54252 364 aaPredicted RBP13.46□□□□□ -0.25
VPS28-210ENST00000529182 CLDN2P57739 230 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 FAM193AP78312 1265 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 ARHGAP8P85298 464 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 OTUD4Q01804 1114 aaKnown RBP13.46□□□□□ -0.25
VPS28-210ENST00000529182 NOMO1Q15155 1222 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 PTPRRQ15256 657 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 KIF19Q2TAC6 998 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 RALGPS1Q5JS13 557 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 MEI1Q5TIA1 1274 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 KDM7AQ6ZMT4 941 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 TMEM145Q8NBT3 493 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 ACTL9Q8TC94 416 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 NETO1Q8TDF5 533 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 CXorf40AQ8TE69 158 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 RMDN1Q96DB5 314 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 QKIQ96PU8 341 aaKnown RBP eCLIP13.46□□□□□ -0.25
VPS28-210ENST00000529182 ALS2CR12Q96Q35 445 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 SMIM14Q96QK8 99 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 SLC17A9Q9BYT1 436 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 BRD8Q9H0E9 1235 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 TMEM9BQ9NQ34 198 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 AMACRQ9UHK6 382 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 TPX2Q9ULW0 747 aaKnown RBP13.46□□□□□ -0.25
VPS28-210ENST00000529182 DMTF1Q9Y222 760 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 EFR3BQ9Y2G0 817 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 ANKRD6Q9Y2G4 727 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 COQ6Q9Y2Z9 468 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 RAI2Q9Y5P3 530 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 SNX11Q9Y5W9 270 aa13.46□□□□□ -0.25
VPS28-210ENST00000529182 TCRBV7S2A1N4TA0A589 114 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 PRAMEF26H0Y7S4 382 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 H7C0C1 242 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 PGLSO95336 258 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 CPP00450 1065 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 SYPP08247 313 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 MMP2P08253 660 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 PDHA1P08559 390 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 MMP12P39900 470 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 CD86P42081 329 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 ATP5OP48047 213 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 SKOR1P84550 965 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 ELP6Q0PNE2 266 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 WASHC5Q12768 1159 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 RALGDSQ12967 914 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 TEAD4Q15561 434 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 UAP1L1Q3KQV9 507 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 TMEM52BQ4KMG9 183 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 ARMC12Q5T9G4 340 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 ERAP2Q6P179 960 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 REXO1L1PQ8IX06 675 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 MINDY1Q8N5J2 469 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 RBM15Q96T37 977 aaKnown RBP eCLIP13.45□□□□□ -0.26
VPS28-210ENST00000529182 C1QTNF2Q9BXJ5 285 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 IL21RQ9HBE5 538 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 B4GALT6Q9UBX8 382 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 CDV3Q9UKY7 258 aaKnown RBP13.45□□□□□ -0.26
VPS28-210ENST00000529182 TRPM6Q9BX84 2022 aa13.45□□□□□ -0.26
VPS28-210ENST00000529182 A0A0U1RQS6 177 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 GOLGA8CPA6NN73 597 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 HACD1B0YJ81 288 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 F5H423 210 aaPredicted RBP13.44□□□□□ -0.26
VPS28-210ENST00000529182 VILLO15195 856 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 FZD6O60353 706 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 TM7SF2O76062 418 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 TJP3O95049 919 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 C6P13671 934 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 CTPS1P17812 591 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 HNRNPA2B1P22626 353 aaKnown RBP13.44□□□□□ -0.26
VPS28-210ENST00000529182 RBL1P28749 1068 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 AKT2P31751 481 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 CD68P34810 354 aaPredicted RBP13.44□□□□□ -0.26
VPS28-210ENST00000529182 NUDT1P36639 197 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 CTSKP43235 329 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 LIG3P49916 1009 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 SUOXP51687 545 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 C21orf59P57076 290 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 EIF3EP60228 445 aaKnown RBP13.44□□□□□ -0.26
VPS28-210ENST00000529182 POLR2LP62875 67 aaKnown RBP13.44□□□□□ -0.26
VPS28-210ENST00000529182 SGCGQ13326 291 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 STAT4Q14765 748 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 RPS6KA1Q15418 735 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 HLA-BQ31612 363 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 TEX44Q53QW1 395 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 SLC45A4Q5BKX6 768 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 PRAMEF14Q5SWL7 426 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 GCNT7Q6ZNI0 430 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 TRIM58Q8NG06 486 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 PIH1D2Q8WWB5 315 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 HTR3CQ8WXA8 447 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 TEKT5Q96M29 485 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 KLF6Q99612 283 aaPredicted RBP13.44□□□□□ -0.26
VPS28-210ENST00000529182 TDRD1Q9BXT4 1180 aaKnown RBP13.44□□□□□ -0.26
VPS28-210ENST00000529182 GAREM1Q9H706 876 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 GLOD4Q9HC38 313 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 HAUS2Q9NVX0 235 aa13.44□□□□□ -0.26
VPS28-210ENST00000529182 TRMT1Q9NXH9 659 aaKnown RBP13.44□□□□□ -0.26
VPS28-210ENST00000529182 CHKBQ9Y259 395 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 136.9 ms