RNA–Protein interactions for RNA: ENST00000465877.1

COL5A1-206, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 3

Gene COL5A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-206ENST00000465877 LGMNQ99538 433 aa13□□□□□ -0.33
COL5A1-206ENST00000465877 ELF4Q99607 663 aaPredicted RBP13□□□□□ -0.33
COL5A1-206ENST00000465877 SEMA3CQ99985 751 aa13□□□□□ -0.33
COL5A1-206ENST00000465877 NOD2Q9HC29 1040 aa13□□□□□ -0.33
COL5A1-206ENST00000465877 HAUS2Q9NVX0 235 aa13□□□□□ -0.33
COL5A1-206ENST00000465877 AMACRQ9UHK6 382 aa13□□□□□ -0.33
COL5A1-206ENST00000465877 BPTFQ12830 3046 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 A0A1B0GTQ1 180 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 KCNK1O00180 336 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 KCNK3O14649 394 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 RIOK3O14730 519 aaKnown RBP12.99□□□□□ -0.33
COL5A1-206ENST00000465877 ARHGAP6O43182 974 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 HTRA2O43464 458 aaPredicted RBP12.99□□□□□ -0.33
COL5A1-206ENST00000465877 CST8O60676 142 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 TM7SF2O76062 418 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 PAK4O96013 591 aaPredicted RBP12.99□□□□□ -0.33
COL5A1-206ENST00000465877 C6P13671 934 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 CCNB1P14635 433 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 PECAM1P16284 738 aaPredicted RBP12.99□□□□□ -0.33
COL5A1-206ENST00000465877 TGM2P21980 687 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 CTNNA2P26232 953 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 IGFALSP35858 605 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 CLDN2P57739 230 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 IFI35P80217 286 aaPredicted RBP12.99□□□□□ -0.33
COL5A1-206ENST00000465877 SEMG2Q02383 582 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 ITKQ08881 620 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 AP1B1Q10567 949 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 RALGDSQ12967 914 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 ZBTB17Q13105 803 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 PDK1Q15118 436 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 LLGL1Q15334 1064 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 PPP2R5EQ16537 467 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 TMEM52BQ4KMG9 183 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 KAZNQ674X7 775 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 PIP4P1Q86T03 277 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 SPATS2Q86XZ4 545 aaKnown RBP12.99□□□□□ -0.33
COL5A1-206ENST00000465877 SLC22A18ASQ8N1D0 253 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 OXR1Q8N573 874 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 OR13H1Q8NG92 308 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 ASB12Q8WXK4 309 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 KLF6Q99612 283 aaPredicted RBP12.99□□□□□ -0.33
COL5A1-206ENST00000465877 C1QTNF2Q9BXJ5 285 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 CEP41Q9BYV8 373 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 GRPEL1Q9HAV7 217 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 GPR27Q9NS67 375 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 COQ6Q9Y2Z9 468 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 PCDHGC4Q9Y5F7 938 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 PCDHGB2Q9Y5G2 931 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 CAPN6Q9Y6Q1 641 aa12.99□□□□□ -0.33
COL5A1-206ENST00000465877 MYLKQ15746 1914 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 ZNF106Q9H2Y7 1883 aaKnown RBP12.98□□□□□ -0.33
COL5A1-206ENST00000465877 A0A1W2PQ67 120 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 MED19A0JLT2 244 aaPredicted RBP12.98□□□□□ -0.33
COL5A1-206ENST00000465877 CCDC66A2RUB6 948 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 POM121BA6NF01 834 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 FPGTO14772 594 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 GIPC1O14908 333 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 YKT6O15498 198 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 FLRT2O43155 660 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 SH3BP5O60239 455 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 MMP20O60882 483 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 ZRANB2O95218 330 aaKnown RBP eCLIP12.98□□□□□ -0.33
COL5A1-206ENST00000465877 CEACAM1P13688 526 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 EPHA8P29322 1005 aaPredicted RBP12.98□□□□□ -0.33
COL5A1-206ENST00000465877 DSC2Q02487 901 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 ADCY2Q08462 1091 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 SGCGQ13326 291 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 PRKD1Q15139 912 aaPredicted RBP12.98□□□□□ -0.33
COL5A1-206ENST00000465877 DPPA4Q7L190 304 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 SYCE1Q8N0S2 351 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.98□□□□□ -0.33
COL5A1-206ENST00000465877 TP53I13Q8NBR0 393 aaPredicted RBP12.98□□□□□ -0.33
COL5A1-206ENST00000465877 FAM174AQ8TBP5 190 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 KIAA1524Q8TCG1 905 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 HAUS1Q96CS2 278 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 KLHDC7BQ96G42 594 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 LENG8Q96PV6 779 aaPredicted RBP12.98□□□□□ -0.33
COL5A1-206ENST00000465877 IL12RB2Q99665 862 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 C1QTNF7Q9BXJ2 289 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 SLC32A1Q9H598 525 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 ERVMER34-1Q9H9K5 563 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 RBM22Q9NW64 420 aaKnown RBP eCLIP12.98□□□□□ -0.33
COL5A1-206ENST00000465877 PCDHB9Q9Y5E1 797 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 PCDHA3Q9Y5H8 950 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 RAI2Q9Y5P3 530 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 ADGRG1Q9Y653 693 aa12.98□□□□□ -0.33
COL5A1-206ENST00000465877 PCDHGA12O60330 932 aa12.97□□□□□ -0.33
COL5A1-206ENST00000465877 DFNA5O60443 496 aa12.97□□□□□ -0.33
COL5A1-206ENST00000465877 PGLSO95336 258 aa12.97□□□□□ -0.33
COL5A1-206ENST00000465877 ELFN1P0C7U0 828 aa12.97□□□□□ -0.33
COL5A1-206ENST00000465877 PTPN7P35236 360 aa12.97□□□□□ -0.33
COL5A1-206ENST00000465877 RABIFP47224 123 aa12.97□□□□□ -0.33
COL5A1-206ENST00000465877 NR2C2P49116 596 aa12.97□□□□□ -0.33
COL5A1-206ENST00000465877 ARRB1P49407 418 aaPredicted RBP12.97□□□□□ -0.33
COL5A1-206ENST00000465877 LIG3P49916 1009 aa12.97□□□□□ -0.33
COL5A1-206ENST00000465877 POLR2LP62875 67 aaKnown RBP12.97□□□□□ -0.33
COL5A1-206ENST00000465877 FAM193AP78312 1265 aa12.97□□□□□ -0.33
COL5A1-206ENST00000465877 CCZ1BP86790 482 aa12.97□□□□□ -0.33
COL5A1-206ENST00000465877 CCZ1P86791 482 aaPredicted RBP12.97□□□□□ -0.33
COL5A1-206ENST00000465877 IRF4Q15306 451 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms