RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 STRN4Q9NRL3 753 aa26.99■■□□□ 1.91
SHKBP1-214ENST00000597396 KNSTRNQ9Y448 316 aa26.99■■□□□ 1.91
SHKBP1-214ENST00000597396 EVA1CP58658 441 aa26.98■■□□□ 1.91
SHKBP1-214ENST00000597396 VPS72Q15906 364 aa26.98■■□□□ 1.91
SHKBP1-214ENST00000597396 ABCC6O95255 1503 aa26.97■■□□□ 1.91
SHKBP1-214ENST00000597396 GJD4Q96KN9 370 aaPredicted RBP26.96■■□□□ 1.91
SHKBP1-214ENST00000597396 GLI3P10071 1580 aa26.96■■□□□ 1.91
SHKBP1-214ENST00000597396 MAP2P11137 1827 aaKnown RBP26.95■■□□□ 1.9
SHKBP1-214ENST00000597396 COL5A2P05997 1499 aaPredicted RBP26.94■■□□□ 1.9
SHKBP1-214ENST00000597396 NSD2O96028 1365 aa26.94■■□□□ 1.9
SHKBP1-214ENST00000597396 FBLN1P23142 703 aa26.91■■□□□ 1.9
SHKBP1-214ENST00000597396 AXIN2Q9Y2T1 843 aa26.91■■□□□ 1.9
SHKBP1-214ENST00000597396 MAP3K19Q56UN5 1328 aa26.9■■□□□ 1.9
SHKBP1-214ENST00000597396 AMPHP49418 695 aa26.89■■□□□ 1.9
SHKBP1-214ENST00000597396 SPATA31A5Q5VU36 1347 aa26.89■■□□□ 1.89
SHKBP1-214ENST00000597396 SPATA31A7Q8IWB4 1347 aa26.89■■□□□ 1.89
SHKBP1-214ENST00000597396 RRS1Q15050 365 aaKnown RBP26.88■■□□□ 1.89
SHKBP1-214ENST00000597396 LARP1Q6PKG0 1096 aaKnown RBP26.88■■□□□ 1.89
SHKBP1-214ENST00000597396 CSB-PGBD3P0DP91 1061 aa26.87■■□□□ 1.89
SHKBP1-214ENST00000597396 PER1O15534 1290 aaPredicted RBP26.86■■□□□ 1.89
SHKBP1-214ENST00000597396 BLMP54132 1417 aaPredicted RBP26.86■■□□□ 1.89
SHKBP1-214ENST00000597396 IP6K1Q92551 441 aa26.86■■□□□ 1.89
SHKBP1-214ENST00000597396 SPATA31A1Q5TZJ5 1347 aa26.86■■□□□ 1.89
SHKBP1-214ENST00000597396 CRB1P82279 1406 aa26.85■■□□□ 1.89
SHKBP1-214ENST00000597396 AMER1Q5JTC6 1135 aaPredicted RBP26.85■■□□□ 1.89
SHKBP1-214ENST00000597396 MORC1Q86VD1 984 aa26.85■■□□□ 1.89
SHKBP1-214ENST00000597396 USP35Q9P2H5 1018 aa26.85■■□□□ 1.89
SHKBP1-214ENST00000597396 WDR17Q8IZU2 1322 aa26.85■■□□□ 1.89
SHKBP1-214ENST00000597396 PEAK1Q9H792 1746 aa26.85■■□□□ 1.89
SHKBP1-214ENST00000597396 RTL1A6NKG5 1358 aa26.84■■□□□ 1.89
SHKBP1-214ENST00000597396 TNNT2P45379 298 aaPredicted RBP26.84■■□□□ 1.89
SHKBP1-214ENST00000597396 TOM1L2Q6ZVM7 507 aa26.84■■□□□ 1.89
SHKBP1-214ENST00000597396 BRWD3Q6RI45 1802 aa26.83■■□□□ 1.89
SHKBP1-214ENST00000597396 FAM208AQ9UK61 1670 aaKnown RBP26.83■■□□□ 1.89
SHKBP1-214ENST00000597396 A0A0G2JS52 829 aa26.83■■□□□ 1.89
SHKBP1-214ENST00000597396 HOXC9P31274 260 aa26.83■■□□□ 1.89
SHKBP1-214ENST00000597396 MYT1Q01538 1121 aa26.83■■□□□ 1.89
SHKBP1-214ENST00000597396 FAM98CQ17RN3 349 aaKnown RBP26.82■■□□□ 1.88
SHKBP1-214ENST00000597396 CC2D1BQ5T0F9 858 aaKnown RBP26.81■■□□□ 1.88
SHKBP1-214ENST00000597396 ANKRD24Q8TF21 1146 aa26.81■■□□□ 1.88
SHKBP1-214ENST00000597396 ERBB3P21860 1342 aa26.81■■□□□ 1.88
SHKBP1-214ENST00000597396 WNK3Q9BYP7 1800 aa26.81■■□□□ 1.88
SHKBP1-214ENST00000597396 EMILIN1Q9Y6C2 1016 aa26.8■■□□□ 1.88
SHKBP1-214ENST00000597396 FLT4P35916 1363 aa26.8■■□□□ 1.88
SHKBP1-214ENST00000597396 KIF24Q5T7B8 1368 aa26.8■■□□□ 1.88
SHKBP1-214ENST00000597396 RGPD2P0DJD1 1756 aa26.79■■□□□ 1.88
SHKBP1-214ENST00000597396 PPM1GO15355 546 aaPredicted RBP26.79■■□□□ 1.88
SHKBP1-214ENST00000597396 CNGB1Q14028 1251 aaPredicted RBP26.79■■□□□ 1.88
SHKBP1-214ENST00000597396 CCDC125Q86Z20 511 aa26.79■■□□□ 1.88
SHKBP1-214ENST00000597396 TCP11L2Q8N4U5 519 aa26.79■■□□□ 1.88
SHKBP1-214ENST00000597396 LTV1Q96GA3 475 aaPredicted RBP26.79■■□□□ 1.88
SHKBP1-214ENST00000597396 SEPT12Q8IYM1 358 aa26.78■■□□□ 1.88
SHKBP1-214ENST00000597396 NPC1L1Q9UHC9 1359 aa26.78■■□□□ 1.88
SHKBP1-214ENST00000597396 THSD7AQ9UPZ6 1657 aa26.78■■□□□ 1.88
SHKBP1-214ENST00000597396 THRAP3Q9Y2W1 955 aaKnown RBP26.77■■□□□ 1.88
SHKBP1-214ENST00000597396 ONECUT3O60422 494 aaPredicted RBP26.76■■□□□ 1.87
SHKBP1-214ENST00000597396 NLRP2Q9NX02 1062 aa26.76■■□□□ 1.87
SHKBP1-214ENST00000597396 SMG6Q86US8 1419 aaKnown RBP26.75■■□□□ 1.87
SHKBP1-214ENST00000597396 BARGINQ6ZT62 677 aa26.75■■□□□ 1.87
SHKBP1-214ENST00000597396 CARD10Q9BWT7 1032 aa26.75■■□□□ 1.87
SHKBP1-214ENST00000597396 POLKQ9UBT6 870 aa26.75■■□□□ 1.87
SHKBP1-214ENST00000597396 INSRP06213 1382 aa26.74■■□□□ 1.87
SHKBP1-214ENST00000597396 DDX10Q13206 875 aaKnown RBP26.73■■□□□ 1.87
SHKBP1-214ENST00000597396 HSP90AB2PQ58FF8 381 aa26.73■■□□□ 1.87
SHKBP1-214ENST00000597396 PARP4Q9UKK3 1724 aaKnown RBP26.73■■□□□ 1.87
SHKBP1-214ENST00000597396 EP400Q96L91 3159 aa26.7■■□□□ 1.87
SHKBP1-214ENST00000597396 ZNF316A6NFI3 1004 aaPredicted RBP26.69■■□□□ 1.86
SHKBP1-214ENST00000597396 LRRC37A3O60309 1634 aa26.66■■□□□ 1.86
SHKBP1-214ENST00000597396 KRT27Q7Z3Y8 459 aa26.66■■□□□ 1.86
SHKBP1-214ENST00000597396 CDCA7Q9BWT1 371 aaPredicted RBP26.66■■□□□ 1.86
SHKBP1-214ENST00000597396 SF3B2Q13435 895 aaKnown RBP26.65■■□□□ 1.86
SHKBP1-214ENST00000597396 DISP2A7MBM2 1401 aa26.64■■□□□ 1.85
SHKBP1-214ENST00000597396 PDE3BQ13370 1112 aa26.62■■□□□ 1.85
SHKBP1-214ENST00000597396 NBPF6Q5VWK0 638 aa26.62■■□□□ 1.85
SHKBP1-214ENST00000597396 NBPF4Q96M43 638 aa26.62■■□□□ 1.85
SHKBP1-214ENST00000597396 IL2RBP14784 551 aa26.61■■□□□ 1.85
SHKBP1-214ENST00000597396 MTHFSP49914 203 aa26.61■■□□□ 1.85
SHKBP1-214ENST00000597396 DDB1Q16531 1140 aa26.61■■□□□ 1.85
SHKBP1-214ENST00000597396 DEFB132Q7Z7B7 95 aa26.6■■□□□ 1.85
SHKBP1-214ENST00000597396 USHBP1Q8N6Y0 703 aa26.6■■□□□ 1.85
SHKBP1-214ENST00000597396 EIF4A2Q14240 407 aaKnown RBP26.59■■□□□ 1.85
SHKBP1-214ENST00000597396 EXOC5O00471 708 aa26.56■■□□□ 1.84
SHKBP1-214ENST00000597396 TNS2Q63HR2 1409 aa26.56■■□□□ 1.84
SHKBP1-214ENST00000597396 FAM182BQ5T319 152 aa26.55■■□□□ 1.84
SHKBP1-214ENST00000597396 EYA1Q99502 592 aa26.55■■□□□ 1.84
SHKBP1-214ENST00000597396 RAPGEF4Q8WZA2 1011 aa26.54■■□□□ 1.84
SHKBP1-214ENST00000597396 PPP2R1AP30153 589 aa26.53■■□□□ 1.84
SHKBP1-214ENST00000597396 PARD3Q8TEW0 1356 aa26.53■■□□□ 1.84
SHKBP1-214ENST00000597396 MEGF6O75095 1541 aa26.53■■□□□ 1.84
SHKBP1-214ENST00000597396 NCAPD2Q15021 1401 aa26.52■■□□□ 1.84
SHKBP1-214ENST00000597396 KAT6BQ8WYB5 2073 aa26.52■■□□□ 1.84
SHKBP1-214ENST00000597396 TATP17735 454 aaPredicted RBP26.51■■□□□ 1.83
SHKBP1-214ENST00000597396 RGPD1P0DJD0 1748 aa26.51■■□□□ 1.83
SHKBP1-214ENST00000597396 CFAP53Q96M91 514 aa26.5■■□□□ 1.83
SHKBP1-214ENST00000597396 SHANK3Q9BYB0 1731 aa26.5■■□□□ 1.83
SHKBP1-214ENST00000597396 OVOS2A0A0G2JMS6 1433 aa26.49■■□□□ 1.83
SHKBP1-214ENST00000597396 SBF2Q86WG5 1849 aa26.49■■□□□ 1.83
SHKBP1-214ENST00000597396 IGSF1Q8N6C5 1336 aa26.49■■□□□ 1.83
SHKBP1-214ENST00000597396 BAG6P46379 1132 aa26.49■■□□□ 1.83
SHKBP1-214ENST00000597396 FAM196AQ6ZSG2 479 aa26.49■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms