RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ABCC6O95255 1503 aa19.53■□□□□ 0.72
VRK3-212ENST00000596814 IL13P35225 146 aa19.52■□□□□ 0.72
VRK3-212ENST00000596814 HAP1P54257 671 aaPredicted RBP19.52■□□□□ 0.72
VRK3-212ENST00000596814 ZC3H6P61129 1189 aaKnown RBP19.52■□□□□ 0.72
VRK3-212ENST00000596814 IP6K1Q92551 441 aa19.52■□□□□ 0.72
VRK3-212ENST00000596814 CPDO75976 1380 aa19.52■□□□□ 0.72
VRK3-212ENST00000596814 RGPD1P0DJD0 1748 aa19.51■□□□□ 0.71
VRK3-212ENST00000596814 U2AF1L5P0DN76 240 aaPredicted RBP19.51■□□□□ 0.71
VRK3-212ENST00000596814 U2AF1Q01081 240 aaKnown RBP eCLIP19.51■□□□□ 0.71
VRK3-212ENST00000596814 EIF4A2Q14240 407 aaKnown RBP19.51■□□□□ 0.71
VRK3-212ENST00000596814 HNRNPUQ00839 825 aaKnown RBP eCLIP19.51■□□□□ 0.71
VRK3-212ENST00000596814 COL18A1P39060 1754 aa19.5■□□□□ 0.71
VRK3-212ENST00000596814 KIAA0232Q92628 1395 aa19.5■□□□□ 0.71
VRK3-212ENST00000596814 RGPD5Q99666 1765 aa19.49■□□□□ 0.71
VRK3-212ENST00000596814 LMO7Q8WWI1 1683 aa19.46■□□□□ 0.71
VRK3-212ENST00000596814 CCDC146Q8IYE0 955 aa19.45■□□□□ 0.7
VRK3-212ENST00000596814 PRDM11Q9NQV5 511 aa19.45■□□□□ 0.7
VRK3-212ENST00000596814 LTV1Q96GA3 475 aaPredicted RBP19.45■□□□□ 0.7
VRK3-212ENST00000596814 CHRNA2Q15822 529 aa19.44■□□□□ 0.7
VRK3-212ENST00000596814 FAM208AQ9UK61 1670 aaKnown RBP19.44■□□□□ 0.7
VRK3-212ENST00000596814 JCADQ9P266 1359 aa19.44■□□□□ 0.7
VRK3-212ENST00000596814 AXIN2Q9Y2T1 843 aa19.43■□□□□ 0.7
VRK3-212ENST00000596814 RGPD2P0DJD1 1756 aa19.43■□□□□ 0.7
VRK3-212ENST00000596814 FCHSD2O94868 740 aa19.42■□□□□ 0.7
VRK3-212ENST00000596814 HMOX1P09601 288 aa19.42■□□□□ 0.7
VRK3-212ENST00000596814 RUNDC1Q96C34 613 aa19.42■□□□□ 0.7
VRK3-212ENST00000596814 RSPH6AQ9H0K4 717 aa19.42■□□□□ 0.7
VRK3-212ENST00000596814 PNNQ9H307 717 aaKnown RBP19.42■□□□□ 0.7
VRK3-212ENST00000596814 IGSF1Q8N6C5 1336 aa19.42■□□□□ 0.7
VRK3-212ENST00000596814 CAMTA1Q9Y6Y1 1673 aa19.42■□□□□ 0.7
VRK3-212ENST00000596814 COL14A1Q05707 1796 aaKnown RBP19.42■□□□□ 0.7
VRK3-212ENST00000596814 ANKRD24Q8TF21 1146 aa19.42■□□□□ 0.7
VRK3-212ENST00000596814 ERBB3P21860 1342 aa19.41■□□□□ 0.7
VRK3-212ENST00000596814 ZBED9Q6R2W3 1325 aa19.41■□□□□ 0.7
VRK3-212ENST00000596814 EYA1Q99502 592 aa19.41■□□□□ 0.7
VRK3-212ENST00000596814 SULT6B1Q6IMI4 303 aa19.4■□□□□ 0.7
VRK3-212ENST00000596814 KDRP35968 1356 aa19.4■□□□□ 0.7
VRK3-212ENST00000596814 MAPK8IP3Q9UPT6 1336 aa19.4■□□□□ 0.7
VRK3-212ENST00000596814 SENP3-EIF4A1A0A087X0R7 540 aa19.39■□□□□ 0.7
VRK3-212ENST00000596814 PRKAR2BP31323 418 aa19.39■□□□□ 0.7
VRK3-212ENST00000596814 HSPA1LP34931 641 aa19.39■□□□□ 0.7
VRK3-212ENST00000596814 PLEKHF1Q96S99 279 aa19.39■□□□□ 0.7
VRK3-212ENST00000596814 AEBP1Q8IUX7 1158 aa19.39■□□□□ 0.69
VRK3-212ENST00000596814 APAF1O14727 1248 aa19.38■□□□□ 0.69
VRK3-212ENST00000596814 COL5A2P05997 1499 aaPredicted RBP19.38■□□□□ 0.69
VRK3-212ENST00000596814 NEFMP07197 916 aa19.37■□□□□ 0.69
VRK3-212ENST00000596814 PLCH1Q4KWH8 1693 aa19.37■□□□□ 0.69
VRK3-212ENST00000596814 NCAPD2Q15021 1401 aa19.37■□□□□ 0.69
VRK3-212ENST00000596814 FAM83GA6ND36 823 aa19.36■□□□□ 0.69
VRK3-212ENST00000596814 NUTM2BA6NNL0 878 aaPredicted RBP19.36■□□□□ 0.69
VRK3-212ENST00000596814 NUTM2EB1AL46 878 aaPredicted RBP19.36■□□□□ 0.69
VRK3-212ENST00000596814 NBPF6Q5VWK0 638 aa19.36■□□□□ 0.69
VRK3-212ENST00000596814 NUTM2AQ8IVF1 878 aaPredicted RBP19.36■□□□□ 0.69
VRK3-212ENST00000596814 TCP11L2Q8N4U5 519 aa19.36■□□□□ 0.69
VRK3-212ENST00000596814 NBPF4Q96M43 638 aa19.36■□□□□ 0.69
VRK3-212ENST00000596814 CSB-PGBD3P0DP91 1061 aa19.35■□□□□ 0.69
VRK3-212ENST00000596814 SALL2Q9Y467 1007 aaPredicted RBP19.35■□□□□ 0.69
VRK3-212ENST00000596814 SPATA31A6Q5VVP1 1343 aa19.35■□□□□ 0.69
VRK3-212ENST00000596814 ADAMTS2O95450 1211 aa19.34■□□□□ 0.69
VRK3-212ENST00000596814 USHBP1Q8N6Y0 703 aa19.34■□□□□ 0.69
VRK3-212ENST00000596814 NGEFQ8N5V2 710 aa19.34■□□□□ 0.69
VRK3-212ENST00000596814 CENPBP07199 599 aaPredicted RBP19.33■□□□□ 0.68
VRK3-212ENST00000596814 WDR17Q8IZU2 1322 aa19.32■□□□□ 0.68
VRK3-212ENST00000596814 NLRP2Q9NX02 1062 aa19.32■□□□□ 0.68
VRK3-212ENST00000596814 NRAPQ86VF7 1730 aa19.32■□□□□ 0.68
VRK3-212ENST00000596814 NWD2Q9ULI1 1742 aa19.32■□□□□ 0.68
VRK3-212ENST00000596814 PHACTR3Q96KR7 559 aa19.31■□□□□ 0.68
VRK3-212ENST00000596814 BTG4Q9NY30 223 aa19.31■□□□□ 0.68
VRK3-212ENST00000596814 RRP7AQ9Y3A4 280 aaKnown RBP19.31■□□□□ 0.68
VRK3-212ENST00000596814 TMPOP42166 694 aaKnown RBP19.31■□□□□ 0.68
VRK3-212ENST00000596814 LRP6O75581 1613 aa19.31■□□□□ 0.68
VRK3-212ENST00000596814 DLG5Q8TDM6 1919 aa19.3■□□□□ 0.68
VRK3-212ENST00000596814 NEUROD2Q15784 382 aa19.3■□□□□ 0.68
VRK3-212ENST00000596814 EVA1CP58658 441 aa19.29■□□□□ 0.68
VRK3-212ENST00000596814 NFE2L2Q16236 605 aa19.29■□□□□ 0.68
VRK3-212ENST00000596814 NCBP3Q53F19 620 aaKnown RBP19.29■□□□□ 0.68
VRK3-212ENST00000596814 STRN4Q9NRL3 753 aa19.29■□□□□ 0.68
VRK3-212ENST00000596814 TOM1L2Q6ZVM7 507 aa19.28■□□□□ 0.68
VRK3-212ENST00000596814 ZNF521Q96K83 1311 aa19.27■□□□□ 0.68
VRK3-212ENST00000596814 CCDC27Q2M243 656 aa19.27■□□□□ 0.68
VRK3-212ENST00000596814 SLIT2O94813 1529 aa19.27■□□□□ 0.68
VRK3-212ENST00000596814 CRB1P82279 1406 aa19.26■□□□□ 0.67
VRK3-212ENST00000596814 RIPK4P57078 832 aa19.26■□□□□ 0.67
VRK3-212ENST00000596814 LARP1Q6PKG0 1096 aaKnown RBP19.26■□□□□ 0.67
VRK3-212ENST00000596814 PHF23Q9BUL5 403 aaPredicted RBP19.25■□□□□ 0.67
VRK3-212ENST00000596814 CARD10Q9BWT7 1032 aa19.25■□□□□ 0.67
VRK3-212ENST00000596814 PARP4Q9UKK3 1724 aaKnown RBP19.25■□□□□ 0.67
VRK3-212ENST00000596814 WWC1Q8IX03 1113 aa19.25■□□□□ 0.67
VRK3-212ENST00000596814 GAS2L2Q8NHY3 880 aa19.25■□□□□ 0.67
VRK3-212ENST00000596814 MEGF6O75095 1541 aa19.24■□□□□ 0.67
VRK3-212ENST00000596814 PDE3BQ13370 1112 aa19.24■□□□□ 0.67
VRK3-212ENST00000596814 RAPGEF4Q8WZA2 1011 aa19.24■□□□□ 0.67
VRK3-212ENST00000596814 PLEKHG2Q9H7P9 1386 aa19.24■□□□□ 0.67
VRK3-212ENST00000596814 MTHFSDQ2M296 383 aaKnown RBP19.23■□□□□ 0.67
VRK3-212ENST00000596814 C8orf37Q96NL8 207 aa19.23■□□□□ 0.67
VRK3-212ENST00000596814 LMOD3Q0VAK6 560 aa19.22■□□□□ 0.67
VRK3-212ENST00000596814 TRIM35Q9UPQ4 493 aa19.22■□□□□ 0.67
VRK3-212ENST00000596814 PKD1L3Q7Z443 1732 aa19.22■□□□□ 0.67
VRK3-212ENST00000596814 TATP17735 454 aaPredicted RBP19.22■□□□□ 0.67
VRK3-212ENST00000596814 WNK3Q9BYP7 1800 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms