RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CRYBG1Q9Y4K1 1723 aa20.27■□□□□ 0.83
SS18-215ENST00000580642 COL22A1Q8NFW1 1626 aaPredicted RBP20.27■□□□□ 0.83
SS18-215ENST00000580642 HNRNPUQ00839 825 aaKnown RBP eCLIP20.26■□□□□ 0.83
SS18-215ENST00000580642 YTHDC1Q96MU7 727 aaKnown RBP20.26■□□□□ 0.83
SS18-215ENST00000580642 COL16A1Q07092 1604 aaPredicted RBP20.26■□□□□ 0.83
SS18-215ENST00000580642 U2SURPO15042 1029 aaKnown RBP20.25■□□□□ 0.83
SS18-215ENST00000580642 RUNDC1Q96C34 613 aa20.25■□□□□ 0.83
SS18-215ENST00000580642 ZBED9Q6R2W3 1325 aa20.25■□□□□ 0.83
SS18-215ENST00000580642 PHLPP1O60346 1717 aa20.24■□□□□ 0.83
SS18-215ENST00000580642 LTN1O94822 1766 aa20.22■□□□□ 0.83
SS18-215ENST00000580642 NEFMP07197 916 aa20.22■□□□□ 0.83
SS18-215ENST00000580642 CENPBP07199 599 aaPredicted RBP20.22■□□□□ 0.83
SS18-215ENST00000580642 HAP1P54257 671 aaPredicted RBP20.22■□□□□ 0.83
SS18-215ENST00000580642 IGSF1Q8N6C5 1336 aa20.22■□□□□ 0.83
SS18-215ENST00000580642 ZC3H6P61129 1189 aaKnown RBP20.21■□□□□ 0.83
SS18-215ENST00000580642 CABLES1Q8TDN4 633 aa20.21■□□□□ 0.83
SS18-215ENST00000580642 KDRP35968 1356 aa20.21■□□□□ 0.83
SS18-215ENST00000580642 KIAA0232Q92628 1395 aa20.21■□□□□ 0.83
SS18-215ENST00000580642 PLEKHF1Q96S99 279 aa20.2■□□□□ 0.82
SS18-215ENST00000580642 RSPH6AQ9H0K4 717 aa20.2■□□□□ 0.82
SS18-215ENST00000580642 JCADQ9P266 1359 aa20.2■□□□□ 0.82
SS18-215ENST00000580642 PLEKHG2Q9H7P9 1386 aa20.19■□□□□ 0.82
SS18-215ENST00000580642 RGPD1P0DJD0 1748 aa20.19■□□□□ 0.82
SS18-215ENST00000580642 PRDM11Q9NQV5 511 aa20.18■□□□□ 0.82
SS18-215ENST00000580642 MAPK8IP3Q9UPT6 1336 aa20.18■□□□□ 0.82
SS18-215ENST00000580642 ABCA3Q99758 1704 aa20.17■□□□□ 0.82
SS18-215ENST00000580642 PDE3BQ13370 1112 aa20.17■□□□□ 0.82
SS18-215ENST00000580642 CCDC27Q2M243 656 aa20.17■□□□□ 0.82
SS18-215ENST00000580642 EYA1Q99502 592 aa20.17■□□□□ 0.82
SS18-215ENST00000580642 ERBB3P21860 1342 aa20.17■□□□□ 0.82
SS18-215ENST00000580642 ANKRD24Q8TF21 1146 aa20.16■□□□□ 0.82
SS18-215ENST00000580642 NCAPD2Q15021 1401 aa20.16■□□□□ 0.82
SS18-215ENST00000580642 COL18A1P39060 1754 aa20.16■□□□□ 0.82
SS18-215ENST00000580642 APAF1O14727 1248 aa20.15■□□□□ 0.82
SS18-215ENST00000580642 SULT6B1Q6IMI4 303 aa20.15■□□□□ 0.82
SS18-215ENST00000580642 TCP11L2Q8N4U5 519 aa20.15■□□□□ 0.82
SS18-215ENST00000580642 AXIN2Q9Y2T1 843 aa20.15■□□□□ 0.82
SS18-215ENST00000580642 SPATA31A6Q5VVP1 1343 aa20.14■□□□□ 0.81
SS18-215ENST00000580642 PRKAR2BP31323 418 aa20.14■□□□□ 0.81
SS18-215ENST00000580642 ZBTB7CA1YPR0 619 aa20.13■□□□□ 0.81
SS18-215ENST00000580642 CCDC146Q8IYE0 955 aa20.13■□□□□ 0.81
SS18-215ENST00000580642 HMOX1P09601 288 aa20.12■□□□□ 0.81
SS18-215ENST00000580642 PHF23Q9BUL5 403 aaPredicted RBP20.12■□□□□ 0.81
SS18-215ENST00000580642 LMO7Q8WWI1 1683 aa20.12■□□□□ 0.81
SS18-215ENST00000580642 FAM208AQ9UK61 1670 aaKnown RBP20.11■□□□□ 0.81
SS18-215ENST00000580642 PLEKHG5O94827 1062 aa20.11■□□□□ 0.81
SS18-215ENST00000580642 FAM83GA6ND36 823 aa20.1■□□□□ 0.81
SS18-215ENST00000580642 TMPOP42166 694 aaKnown RBP20.1■□□□□ 0.81
SS18-215ENST00000580642 NBPF6Q5VWK0 638 aa20.1■□□□□ 0.81
SS18-215ENST00000580642 LTV1Q96GA3 475 aaPredicted RBP20.1■□□□□ 0.81
SS18-215ENST00000580642 NBPF4Q96M43 638 aa20.1■□□□□ 0.81
SS18-215ENST00000580642 CAMTA1Q9Y6Y1 1673 aa20.1■□□□□ 0.81
SS18-215ENST00000580642 WDR17Q8IZU2 1322 aa20.09■□□□□ 0.81
SS18-215ENST00000580642 ZNF521Q96K83 1311 aa20.09■□□□□ 0.81
SS18-215ENST00000580642 COL14A1Q05707 1796 aaKnown RBP20.09■□□□□ 0.81
SS18-215ENST00000580642 LMOD3Q0VAK6 560 aa20.09■□□□□ 0.81
SS18-215ENST00000580642 CHRNA2Q15822 529 aa20.09■□□□□ 0.81
SS18-215ENST00000580642 NFE2L2Q16236 605 aa20.09■□□□□ 0.81
SS18-215ENST00000580642 COL5A2P05997 1499 aaPredicted RBP20.08■□□□□ 0.81
SS18-215ENST00000580642 AEBP1Q8IUX7 1158 aa20.08■□□□□ 0.81
SS18-215ENST00000580642 WDR63Q8IWG1 891 aa20.07■□□□□ 0.8
SS18-215ENST00000580642 GAS2L2Q8NHY3 880 aa20.07■□□□□ 0.8
SS18-215ENST00000580642 CSB-PGBD3P0DP91 1061 aa20.06■□□□□ 0.8
SS18-215ENST00000580642 AMOTQ4VCS5 1084 aa20.06■□□□□ 0.8
SS18-215ENST00000580642 HTATSF1O43719 755 aaKnown RBP20.05■□□□□ 0.8
SS18-215ENST00000580642 HSPA1LP34931 641 aa20.05■□□□□ 0.8
SS18-215ENST00000580642 CALD1Q05682 793 aaKnown RBP20.05■□□□□ 0.8
SS18-215ENST00000580642 WWC1Q8IX03 1113 aa20.05■□□□□ 0.8
SS18-215ENST00000580642 PHACTR3Q96KR7 559 aa20.05■□□□□ 0.8
SS18-215ENST00000580642 CARD10Q9BWT7 1032 aa20.05■□□□□ 0.8
SS18-215ENST00000580642 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.05■□□□□ 0.8
SS18-215ENST00000580642 RIPK4P57078 832 aa20.04■□□□□ 0.8
SS18-215ENST00000580642 EVA1CP58658 441 aa20.04■□□□□ 0.8
SS18-215ENST00000580642 GOLGA2Q08379 1002 aa20.04■□□□□ 0.8
SS18-215ENST00000580642 NLRP2Q9NX02 1062 aa20.04■□□□□ 0.8
SS18-215ENST00000580642 IL16Q14005 1332 aa20.03■□□□□ 0.8
SS18-215ENST00000580642 BTG4Q9NY30 223 aa20.02■□□□□ 0.8
SS18-215ENST00000580642 CRB1P82279 1406 aa20.02■□□□□ 0.79
SS18-215ENST00000580642 E9PSI1 815 aa20.01■□□□□ 0.79
SS18-215ENST00000580642 PLEKHO1Q53GL0 409 aaPredicted RBP20.01■□□□□ 0.79
SS18-215ENST00000580642 RAPGEF4Q8WZA2 1011 aa20.01■□□□□ 0.79
SS18-215ENST00000580642 TOM1L2Q6ZVM7 507 aa20■□□□□ 0.79
SS18-215ENST00000580642 TRIM35Q9UPQ4 493 aa20■□□□□ 0.79
SS18-215ENST00000580642 RGPD5Q99666 1765 aa20■□□□□ 0.79
SS18-215ENST00000580642 SLIT2O94813 1529 aa19.99■□□□□ 0.79
SS18-215ENST00000580642 ADAMTS2O95450 1211 aa19.99■□□□□ 0.79
SS18-215ENST00000580642 SALL2Q9Y467 1007 aaPredicted RBP19.99■□□□□ 0.79
SS18-215ENST00000580642 NUTM2BA6NNL0 878 aaPredicted RBP19.98■□□□□ 0.79
SS18-215ENST00000580642 NUTM2EB1AL46 878 aaPredicted RBP19.98■□□□□ 0.79
SS18-215ENST00000580642 TATP17735 454 aaPredicted RBP19.98■□□□□ 0.79
SS18-215ENST00000580642 NEUROD2Q15784 382 aa19.98■□□□□ 0.79
SS18-215ENST00000580642 MTHFSDQ2M296 383 aaKnown RBP19.98■□□□□ 0.79
SS18-215ENST00000580642 NUTM2AQ8IVF1 878 aaPredicted RBP19.98■□□□□ 0.79
SS18-215ENST00000580642 USHBP1Q8N6Y0 703 aa19.98■□□□□ 0.79
SS18-215ENST00000580642 RRP7AQ9Y3A4 280 aaKnown RBP19.98■□□□□ 0.79
SS18-215ENST00000580642 NWD2Q9ULI1 1742 aa19.98■□□□□ 0.79
SS18-215ENST00000580642 SLFN5Q08AF3 891 aa19.97■□□□□ 0.79
SS18-215ENST00000580642 TRMT2AQ8IZ69 625 aaKnown RBP19.97■□□□□ 0.79
SS18-215ENST00000580642 FNBP4Q8N3X1 1017 aaPredicted RBP19.97■□□□□ 0.79
SS18-215ENST00000580642 THRAP3Q9Y2W1 955 aaKnown RBP19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms