RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 STRN4Q9NRL3 753 aa17.92■□□□□ 0.46
CLK3-224ENST00000568605 CGNL1Q0VF96 1302 aa17.92■□□□□ 0.46
CLK3-224ENST00000568605 CRB1P82279 1406 aa17.91■□□□□ 0.46
CLK3-224ENST00000568605 ARHGEF25Q86VW2 580 aa17.91■□□□□ 0.46
CLK3-224ENST00000568605 ZRANB1Q9UGI0 708 aa17.91■□□□□ 0.46
CLK3-224ENST00000568605 KIF7Q2M1P5 1343 aa17.91■□□□□ 0.46
CLK3-224ENST00000568605 SPATA31A5Q5VU36 1347 aa17.91■□□□□ 0.46
CLK3-224ENST00000568605 SPATA31A7Q8IWB4 1347 aa17.91■□□□□ 0.46
CLK3-224ENST00000568605 BLMP54132 1417 aaPredicted RBP17.9■□□□□ 0.46
CLK3-224ENST00000568605 LRRC37A3O60309 1634 aa17.9■□□□□ 0.46
CLK3-224ENST00000568605 NSD2O96028 1365 aa17.9■□□□□ 0.46
CLK3-224ENST00000568605 RTL1A6NKG5 1358 aa17.89■□□□□ 0.45
CLK3-224ENST00000568605 RGPD1P0DJD0 1748 aa17.89■□□□□ 0.45
CLK3-224ENST00000568605 A0A0G2JS52 829 aa17.88■□□□□ 0.45
CLK3-224ENST00000568605 FYB1O15117 783 aa17.88■□□□□ 0.45
CLK3-224ENST00000568605 MYT1Q01538 1121 aa17.88■□□□□ 0.45
CLK3-224ENST00000568605 PEAK1Q9H792 1746 aa17.88■□□□□ 0.45
CLK3-224ENST00000568605 SPATA31A1Q5TZJ5 1347 aa17.88■□□□□ 0.45
CLK3-224ENST00000568605 GGNBP2Q9H3C7 697 aa17.87■□□□□ 0.45
CLK3-224ENST00000568605 WDR17Q8IZU2 1322 aa17.87■□□□□ 0.45
CLK3-224ENST00000568605 CCDC7Q96M83 1385 aa17.87■□□□□ 0.45
CLK3-224ENST00000568605 CARD14Q9BXL6 1004 aa17.86■□□□□ 0.45
CLK3-224ENST00000568605 C11orf95C9JLR9 678 aaPredicted RBP17.85■□□□□ 0.45
CLK3-224ENST00000568605 LARP1Q6PKG0 1096 aaKnown RBP17.85■□□□□ 0.45
CLK3-224ENST00000568605 PANK3Q9H999 370 aa17.85■□□□□ 0.45
CLK3-224ENST00000568605 SMG6Q86US8 1419 aaKnown RBP17.84■□□□□ 0.45
CLK3-224ENST00000568605 KIF24Q5T7B8 1368 aa17.84■□□□□ 0.45
CLK3-224ENST00000568605 CSB-PGBD3P0DP91 1061 aa17.84■□□□□ 0.45
CLK3-224ENST00000568605 ZEB1P37275 1124 aaPredicted RBP17.84■□□□□ 0.45
CLK3-224ENST00000568605 FAM98CQ17RN3 349 aaKnown RBP17.84■□□□□ 0.45
CLK3-224ENST00000568605 TOM1L2Q6ZVM7 507 aa17.84■□□□□ 0.45
CLK3-224ENST00000568605 THRAP3Q9Y2W1 955 aaKnown RBP17.84■□□□□ 0.45
CLK3-224ENST00000568605 ERBB3P21860 1342 aa17.83■□□□□ 0.44
CLK3-224ENST00000568605 SEPT12Q8IYM1 358 aa17.83■□□□□ 0.44
CLK3-224ENST00000568605 TCP11L2Q8N4U5 519 aa17.83■□□□□ 0.44
CLK3-224ENST00000568605 USP35Q9P2H5 1018 aa17.83■□□□□ 0.44
CLK3-224ENST00000568605 SBF2Q86WG5 1849 aa17.83■□□□□ 0.44
CLK3-224ENST00000568605 ONECUT3O60422 494 aaPredicted RBP17.82■□□□□ 0.44
CLK3-224ENST00000568605 BARGINQ6ZT62 677 aa17.82■□□□□ 0.44
CLK3-224ENST00000568605 KNSTRNQ9Y448 316 aa17.82■□□□□ 0.44
CLK3-224ENST00000568605 FLT4P35916 1363 aa17.81■□□□□ 0.44
CLK3-224ENST00000568605 MAP3K19Q56UN5 1328 aa17.81■□□□□ 0.44
CLK3-224ENST00000568605 AMPHP49418 695 aa17.81■□□□□ 0.44
CLK3-224ENST00000568605 AXIN2Q9Y2T1 843 aa17.81■□□□□ 0.44
CLK3-224ENST00000568605 TNS1Q9HBL0 1735 aaKnown RBP17.81■□□□□ 0.44
CLK3-224ENST00000568605 WASHC2AQ641Q2 1341 aa17.8■□□□□ 0.44
CLK3-224ENST00000568605 IP6K1Q92551 441 aa17.8■□□□□ 0.44
CLK3-224ENST00000568605 HOXC9P31274 260 aa17.78■□□□□ 0.44
CLK3-224ENST00000568605 KRT27Q7Z3Y8 459 aa17.78■□□□□ 0.44
CLK3-224ENST00000568605 CDCA7Q9BWT1 371 aaPredicted RBP17.78■□□□□ 0.44
CLK3-224ENST00000568605 EP400Q96L91 3159 aa17.77■□□□□ 0.44
CLK3-224ENST00000568605 RRS1Q15050 365 aaKnown RBP17.77■□□□□ 0.44
CLK3-224ENST00000568605 ANKRD24Q8TF21 1146 aa17.77■□□□□ 0.44
CLK3-224ENST00000568605 CARD10Q9BWT7 1032 aa17.77■□□□□ 0.44
CLK3-224ENST00000568605 SHANK3Q9BYB0 1731 aa17.77■□□□□ 0.44
CLK3-224ENST00000568605 KAT6BQ8WYB5 2073 aa17.76■□□□□ 0.43
CLK3-224ENST00000568605 DISP2A7MBM2 1401 aa17.75■□□□□ 0.43
CLK3-224ENST00000568605 TNS2Q63HR2 1409 aa17.75■□□□□ 0.43
CLK3-224ENST00000568605 NLRP2Q9NX02 1062 aa17.75■□□□□ 0.43
CLK3-224ENST00000568605 INSRP06213 1382 aa17.75■□□□□ 0.43
CLK3-224ENST00000568605 PKD1L3Q7Z443 1732 aa17.73■□□□□ 0.43
CLK3-224ENST00000568605 PDE3BQ13370 1112 aa17.73■□□□□ 0.43
CLK3-224ENST00000568605 MORC1Q86VD1 984 aa17.73■□□□□ 0.43
CLK3-224ENST00000568605 UPF1Q92900 1129 aaKnown RBP eCLIP17.73■□□□□ 0.43
CLK3-224ENST00000568605 RGPD3A6NKT7 1758 aaPredicted RBP17.73■□□□□ 0.43
CLK3-224ENST00000568605 RGPD4Q7Z3J3 1758 aa17.73■□□□□ 0.43
CLK3-224ENST00000568605 OVOS2A0A0G2JMS6 1433 aa17.72■□□□□ 0.43
CLK3-224ENST00000568605 NPC1L1Q9UHC9 1359 aa17.72■□□□□ 0.43
CLK3-224ENST00000568605 FBLN1P23142 703 aa17.72■□□□□ 0.43
CLK3-224ENST00000568605 LTV1Q96GA3 475 aaPredicted RBP17.72■□□□□ 0.43
CLK3-224ENST00000568605 NHSQ6T4R5 1651 aa17.71■□□□□ 0.43
CLK3-224ENST00000568605 DDB1Q16531 1140 aa17.71■□□□□ 0.43
CLK3-224ENST00000568605 CCDC125Q86Z20 511 aa17.71■□□□□ 0.43
CLK3-224ENST00000568605 EMILIN1Q9Y6C2 1016 aa17.71■□□□□ 0.43
CLK3-224ENST00000568605 PPM1GO15355 546 aaPredicted RBP17.7■□□□□ 0.42
CLK3-224ENST00000568605 TNNT2P45379 298 aaPredicted RBP17.7■□□□□ 0.42
CLK3-224ENST00000568605 AMER1Q5JTC6 1135 aaPredicted RBP17.7■□□□□ 0.42
CLK3-224ENST00000568605 DOT1LQ8TEK3 1739 aa17.69■□□□□ 0.42
CLK3-224ENST00000568605 VIRMAQ69YN4 1812 aaKnown RBP17.68■□□□□ 0.42
CLK3-224ENST00000568605 IL2RBP14784 551 aa17.68■□□□□ 0.42
CLK3-224ENST00000568605 SF3B2Q13435 895 aaKnown RBP17.68■□□□□ 0.42
CLK3-224ENST00000568605 PER1O15534 1290 aaPredicted RBP17.67■□□□□ 0.42
CLK3-224ENST00000568605 HSP90AB2PQ58FF8 381 aa17.67■□□□□ 0.42
CLK3-224ENST00000568605 FAM196AQ6ZSG2 479 aa17.67■□□□□ 0.42
CLK3-224ENST00000568605 POLKQ9UBT6 870 aa17.66■□□□□ 0.42
CLK3-224ENST00000568605 RREB1Q92766 1687 aa17.66■□□□□ 0.42
CLK3-224ENST00000568605 NCAPD2Q15021 1401 aa17.65■□□□□ 0.42
CLK3-224ENST00000568605 CC2D1BQ5T0F9 858 aaKnown RBP17.65■□□□□ 0.42
CLK3-224ENST00000568605 MEGF6O75095 1541 aa17.65■□□□□ 0.42
CLK3-224ENST00000568605 BTAF1O14981 1849 aa17.65■□□□□ 0.42
CLK3-224ENST00000568605 EXOC5O00471 708 aa17.64■□□□□ 0.41
CLK3-224ENST00000568605 BCL9O00512 1426 aa17.64■□□□□ 0.41
CLK3-224ENST00000568605 ITGB4P16144 1822 aa17.63■□□□□ 0.41
CLK3-224ENST00000568605 FAM182BQ5T319 152 aa17.62■□□□□ 0.41
CLK3-224ENST00000568605 RAPGEF4Q8WZA2 1011 aa17.62■□□□□ 0.41
CLK3-224ENST00000568605 NUP188Q5SRE5 1749 aa17.61■□□□□ 0.41
CLK3-224ENST00000568605 BAG6P46379 1132 aa17.61■□□□□ 0.41
CLK3-224ENST00000568605 NBPF6Q5VWK0 638 aa17.61■□□□□ 0.41
CLK3-224ENST00000568605 NBPF4Q96M43 638 aa17.61■□□□□ 0.41
CLK3-224ENST00000568605 PLEKHG2Q9H7P9 1386 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms