RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ORAI2Q96SN7 254 aa16.93■□□□□ 0.3
VPS4A-204ENST00000566354 PHF8Q9UPP1 1060 aa16.93■□□□□ 0.3
VPS4A-204ENST00000566354 LRRC7Q96NW7 1537 aa16.93■□□□□ 0.3
VPS4A-204ENST00000566354 TTC21BQ7Z4L5 1316 aa16.92■□□□□ 0.3
VPS4A-204ENST00000566354 NCOA3Q9Y6Q9 1424 aa16.92■□□□□ 0.3
VPS4A-204ENST00000566354 SSH2Q76I76 1423 aa16.91■□□□□ 0.3
VPS4A-204ENST00000566354 PANK1Q8TE04 598 aa16.91■□□□□ 0.3
VPS4A-204ENST00000566354 COG6Q9Y2V7 657 aa16.91■□□□□ 0.3
VPS4A-204ENST00000566354 ATF3P18847 181 aa16.91■□□□□ 0.3
VPS4A-204ENST00000566354 SHPRHQ149N8 1683 aa16.9■□□□□ 0.3
VPS4A-204ENST00000566354 FBLN1P23142 703 aa16.9■□□□□ 0.3
VPS4A-204ENST00000566354 WDR63Q8IWG1 891 aa16.9■□□□□ 0.3
VPS4A-204ENST00000566354 C1orf167Q5SNV9 1468 aa16.89■□□□□ 0.3
VPS4A-204ENST00000566354 MTHFSP49914 203 aa16.89■□□□□ 0.29
VPS4A-204ENST00000566354 RARSP54136 660 aaKnown RBP16.89■□□□□ 0.29
VPS4A-204ENST00000566354 MSH6P52701 1360 aa16.89■□□□□ 0.29
VPS4A-204ENST00000566354 USP19O94966 1318 aa16.89■□□□□ 0.29
VPS4A-204ENST00000566354 TCP11L2Q8N4U5 519 aa16.88■□□□□ 0.29
VPS4A-204ENST00000566354 DCCP43146 1447 aa16.88■□□□□ 0.29
VPS4A-204ENST00000566354 MST1RQ04912 1400 aa16.88■□□□□ 0.29
VPS4A-204ENST00000566354 CCDC27Q2M243 656 aa16.88■□□□□ 0.29
VPS4A-204ENST00000566354 FRAT1Q92837 279 aaPredicted RBP16.88■□□□□ 0.29
VPS4A-204ENST00000566354 COG3Q96JB2 828 aa16.87■□□□□ 0.29
VPS4A-204ENST00000566354 IQSEC2Q5JU85 1478 aa16.87■□□□□ 0.29
VPS4A-204ENST00000566354 FOXO3O43524 673 aa16.87■□□□□ 0.29
VPS4A-204ENST00000566354 FRAT2O75474 233 aaPredicted RBP16.87■□□□□ 0.29
VPS4A-204ENST00000566354 NEUROD2Q15784 382 aa16.87■□□□□ 0.29
VPS4A-204ENST00000566354 CADPS2Q86UW7 1296 aa16.86■□□□□ 0.29
VPS4A-204ENST00000566354 CFAP53Q96M91 514 aa16.86■□□□□ 0.29
VPS4A-204ENST00000566354 XPCQ01831 940 aaPredicted RBP16.85■□□□□ 0.29
VPS4A-204ENST00000566354 BECN1Q14457 450 aa16.85■□□□□ 0.29
VPS4A-204ENST00000566354 TTC21AQ8NDW8 1320 aa16.85■□□□□ 0.29
VPS4A-204ENST00000566354 PIK3C2AO00443 1686 aa16.85■□□□□ 0.29
VPS4A-204ENST00000566354 GLIPR1L2Q4G1C9 344 aa16.85■□□□□ 0.29
VPS4A-204ENST00000566354 RRP7AQ9Y3A4 280 aaKnown RBP16.85■□□□□ 0.29
VPS4A-204ENST00000566354 MAP2P11137 1827 aaKnown RBP16.85■□□□□ 0.29
VPS4A-204ENST00000566354 OVOS2A0A0J9YW53 1432 aa16.84■□□□□ 0.29
VPS4A-204ENST00000566354 OVOS2Q6IE36 1432 aa16.84■□□□□ 0.29
VPS4A-204ENST00000566354 PSME1Q06323 249 aa16.84■□□□□ 0.29
VPS4A-204ENST00000566354 SEC24BO95487 1268 aa16.83■□□□□ 0.28
VPS4A-204ENST00000566354 NUTM2GQ5VZR2 741 aa16.82■□□□□ 0.28
VPS4A-204ENST00000566354 POLKQ9UBT6 870 aa16.82■□□□□ 0.28
VPS4A-204ENST00000566354 MYH16Q9H6N6 1097 aa16.82■□□□□ 0.28
VPS4A-204ENST00000566354 PCDHB15Q9Y5E8 787 aa16.82■□□□□ 0.28
VPS4A-204ENST00000566354 DDX17Q92841 729 aaKnown RBP16.81■□□□□ 0.28
VPS4A-204ENST00000566354 RWDD1Q9H446 243 aaPredicted RBP16.81■□□□□ 0.28
VPS4A-204ENST00000566354 KIF1AQ12756 1690 aa16.81■□□□□ 0.28
VPS4A-204ENST00000566354 SOX12O15370 315 aa16.81■□□□□ 0.28
VPS4A-204ENST00000566354 RLBP1P12271 317 aa16.81■□□□□ 0.28
VPS4A-204ENST00000566354 NLRP6P59044 892 aa16.81■□□□□ 0.28
VPS4A-204ENST00000566354 RRS1Q15050 365 aaKnown RBP16.81■□□□□ 0.28
VPS4A-204ENST00000566354 ABTB2Q8N961 1025 aa16.81■□□□□ 0.28
VPS4A-204ENST00000566354 UPF2Q9HAU5 1272 aaKnown RBP16.81■□□□□ 0.28
VPS4A-204ENST00000566354 BRPF3Q9ULD4 1205 aa16.81■□□□□ 0.28
VPS4A-204ENST00000566354 EMILIN1Q9Y6C2 1016 aa16.81■□□□□ 0.28
VPS4A-204ENST00000566354 AATKQ6ZMQ8 1374 aa16.79■□□□□ 0.28
VPS4A-204ENST00000566354 USP31Q70CQ4 1352 aa16.79■□□□□ 0.28
VPS4A-204ENST00000566354 MARF1Q9Y4F3 1742 aaKnown RBP16.79■□□□□ 0.28
VPS4A-204ENST00000566354 COL3A1P02461 1466 aaPredicted RBP16.78■□□□□ 0.28
VPS4A-204ENST00000566354 CT47B1P0C2W7 299 aaPredicted RBP16.78■□□□□ 0.28
VPS4A-204ENST00000566354 KRT28Q7Z3Y7 464 aa16.78■□□□□ 0.28
VPS4A-204ENST00000566354 PDZRN3Q9UPQ7 1066 aa16.78■□□□□ 0.28
VPS4A-204ENST00000566354 LTBP4Q8N2S1 1624 aa16.78■□□□□ 0.28
VPS4A-204ENST00000566354 SLAIN2Q9P270 581 aa16.78■□□□□ 0.28
VPS4A-204ENST00000566354 PNPLA6Q8IY17 1366 aa16.77■□□□□ 0.27
VPS4A-204ENST00000566354 TRPM3Q9HCF6 1732 aaPredicted RBP16.76■□□□□ 0.27
VPS4A-204ENST00000566354 BRINP3Q76B58 766 aa16.76■□□□□ 0.27
VPS4A-204ENST00000566354 TBC1D32Q96NH3 1257 aa16.76■□□□□ 0.27
VPS4A-204ENST00000566354 BCL2L13Q9BXK5 485 aa16.76■□□□□ 0.27
VPS4A-204ENST00000566354 U2AF1L5P0DN76 240 aaPredicted RBP16.76■□□□□ 0.27
VPS4A-204ENST00000566354 U2AF1Q01081 240 aaKnown RBP eCLIP16.76■□□□□ 0.27
VPS4A-204ENST00000566354 MVPQ14764 893 aaKnown RBP16.76■□□□□ 0.27
VPS4A-204ENST00000566354 TNNQ9UQP3 1299 aa16.76■□□□□ 0.27
VPS4A-204ENST00000566354 ZKSCAN2Q63HK3 967 aa16.75■□□□□ 0.27
VPS4A-204ENST00000566354 USP54Q70EL1 1684 aa16.74■□□□□ 0.27
VPS4A-204ENST00000566354 LMOD2Q6P5Q4 547 aa16.74■□□□□ 0.27
VPS4A-204ENST00000566354 DZIP1LQ8IYY4 767 aaKnown RBP16.73■□□□□ 0.27
VPS4A-204ENST00000566354 ANTXR1Q9H6X2 564 aa16.73■□□□□ 0.27
VPS4A-204ENST00000566354 CDK12Q9NYV4 1490 aaPredicted RBP16.73■□□□□ 0.27
VPS4A-204ENST00000566354 NPHP3Q7Z494 1330 aa16.73■□□□□ 0.27
VPS4A-204ENST00000566354 U2SURPO15042 1029 aaKnown RBP16.73■□□□□ 0.27
VPS4A-204ENST00000566354 DIAPH1O60610 1272 aaKnown RBP16.73■□□□□ 0.27
VPS4A-204ENST00000566354 FTSJ3Q8IY81 847 aaKnown RBP16.73■□□□□ 0.27
VPS4A-204ENST00000566354 PEAK1Q9H792 1746 aa16.72■□□□□ 0.27
VPS4A-204ENST00000566354 MAP3K19Q56UN5 1328 aa16.72■□□□□ 0.27
VPS4A-204ENST00000566354 SLKQ9H2G2 1235 aaPredicted RBP16.71■□□□□ 0.27
VPS4A-204ENST00000566354 PXDNQ92626 1479 aa16.7■□□□□ 0.26
VPS4A-204ENST00000566354 ALS2Q96Q42 1657 aa16.7■□□□□ 0.26
VPS4A-204ENST00000566354 HSP90AB2PQ58FF8 381 aa16.69■□□□□ 0.26
VPS4A-204ENST00000566354 TBC1D2Q9BYX2 928 aa16.69■□□□□ 0.26
VPS4A-204ENST00000566354 HDAC1Q13547 482 aaPredicted RBP16.69■□□□□ 0.26
VPS4A-204ENST00000566354 IL13P35225 146 aa16.68■□□□□ 0.26
VPS4A-204ENST00000566354 PLEKHF1Q96S99 279 aa16.68■□□□□ 0.26
VPS4A-204ENST00000566354 SMC4Q9NTJ3 1288 aa16.68■□□□□ 0.26
VPS4A-204ENST00000566354 ARXQ96QS3 562 aa16.68■□□□□ 0.26
VPS4A-204ENST00000566354 DDX19BQ9UMR2 479 aa16.68■□□□□ 0.26
VPS4A-204ENST00000566354 SBNO1A3KN83 1393 aa16.67■□□□□ 0.26
VPS4A-204ENST00000566354 TMPOP42166 694 aaKnown RBP16.67■□□□□ 0.26
VPS4A-204ENST00000566354 EXOSC9Q06265 439 aaKnown RBP16.67■□□□□ 0.26
VPS4A-204ENST00000566354 NFAT5O94916 1531 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms