RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 FBLN1P23142 703 aa17.08■□□□□ 0.32
CLK3-214ENST00000564096 ZBTB7CA1YPR0 619 aa17.07■□□□□ 0.32
CLK3-214ENST00000564096 HOXC9P31274 260 aa17.07■□□□□ 0.32
CLK3-214ENST00000564096 ARHGEF25Q86VW2 580 aa17.07■□□□□ 0.32
CLK3-214ENST00000564096 JCADQ9P266 1359 aa17.06■□□□□ 0.32
CLK3-214ENST00000564096 U2SURPO15042 1029 aaKnown RBP17.05■□□□□ 0.32
CLK3-214ENST00000564096 CABLES1Q8TDN4 633 aa17.05■□□□□ 0.32
CLK3-214ENST00000564096 IP6K1Q92551 441 aa17.05■□□□□ 0.32
CLK3-214ENST00000564096 YTHDC1Q96MU7 727 aaKnown RBP17.05■□□□□ 0.32
CLK3-214ENST00000564096 KIAA0232Q92628 1395 aa17.04■□□□□ 0.32
CLK3-214ENST00000564096 U2AF1L5P0DN76 240 aaPredicted RBP17.04■□□□□ 0.32
CLK3-214ENST00000564096 U2AF1Q01081 240 aaKnown RBP eCLIP17.04■□□□□ 0.32
CLK3-214ENST00000564096 PNNQ9H307 717 aaKnown RBP17.04■□□□□ 0.32
CLK3-214ENST00000564096 PRDM11Q9NQV5 511 aa17.04■□□□□ 0.32
CLK3-214ENST00000564096 IL13P35225 146 aa17.03■□□□□ 0.32
CLK3-214ENST00000564096 ZC3H6P61129 1189 aaKnown RBP17.03■□□□□ 0.32
CLK3-214ENST00000564096 EIF4A2Q14240 407 aaKnown RBP17.03■□□□□ 0.32
CLK3-214ENST00000564096 HSP90AB2PQ58FF8 381 aa17.03■□□□□ 0.32
CLK3-214ENST00000564096 ADAMTS8Q9UP79 889 aa17.02■□□□□ 0.32
CLK3-214ENST00000564096 NEFMP07197 916 aa17.01■□□□□ 0.31
CLK3-214ENST00000564096 HNRNPUQ00839 825 aaKnown RBP eCLIP17■□□□□ 0.31
CLK3-214ENST00000564096 FAM208AQ9UK61 1670 aaKnown RBP17■□□□□ 0.31
CLK3-214ENST00000564096 SPATA31A6Q5VVP1 1343 aa16.99■□□□□ 0.31
CLK3-214ENST00000564096 MAPK8IP3Q9UPT6 1336 aa16.99■□□□□ 0.31
CLK3-214ENST00000564096 RGPD1P0DJD0 1748 aa16.99■□□□□ 0.31
CLK3-214ENST00000564096 COL14A1Q05707 1796 aaKnown RBP16.99■□□□□ 0.31
CLK3-214ENST00000564096 ERBB3P21860 1342 aa16.98■□□□□ 0.31
CLK3-214ENST00000564096 LMO7Q8WWI1 1683 aa16.98■□□□□ 0.31
CLK3-214ENST00000564096 ANKRD24Q8TF21 1146 aa16.98■□□□□ 0.31
CLK3-214ENST00000564096 IGSF1Q8N6C5 1336 aa16.97■□□□□ 0.31
CLK3-214ENST00000564096 FCHSD2O94868 740 aa16.97■□□□□ 0.31
CLK3-214ENST00000564096 RUNDC1Q96C34 613 aa16.97■□□□□ 0.31
CLK3-214ENST00000564096 LTV1Q96GA3 475 aaPredicted RBP16.97■□□□□ 0.31
CLK3-214ENST00000564096 HSPA1LP34931 641 aa16.96■□□□□ 0.31
CLK3-214ENST00000564096 CHRNA2Q15822 529 aa16.96■□□□□ 0.31
CLK3-214ENST00000564096 COL18A1P39060 1754 aa16.96■□□□□ 0.31
CLK3-214ENST00000564096 CAMTA1Q9Y6Y1 1673 aa16.95■□□□□ 0.3
CLK3-214ENST00000564096 COL5A2P05997 1499 aaPredicted RBP16.95■□□□□ 0.3
CLK3-214ENST00000564096 KDRP35968 1356 aa16.95■□□□□ 0.3
CLK3-214ENST00000564096 CSB-PGBD3P0DP91 1061 aa16.95■□□□□ 0.3
CLK3-214ENST00000564096 NGEFQ8N5V2 710 aa16.95■□□□□ 0.3
CLK3-214ENST00000564096 CCDC146Q8IYE0 955 aa16.94■□□□□ 0.3
CLK3-214ENST00000564096 RSPH6AQ9H0K4 717 aa16.94■□□□□ 0.3
CLK3-214ENST00000564096 ZBED9Q6R2W3 1325 aa16.94■□□□□ 0.3
CLK3-214ENST00000564096 HMOX1P09601 288 aa16.93■□□□□ 0.3
CLK3-214ENST00000564096 PRKAR2BP31323 418 aa16.93■□□□□ 0.3
CLK3-214ENST00000564096 SULT6B1Q6IMI4 303 aa16.93■□□□□ 0.3
CLK3-214ENST00000564096 EYA1Q99502 592 aa16.93■□□□□ 0.3
CLK3-214ENST00000564096 NCAPD2Q15021 1401 aa16.93■□□□□ 0.3
CLK3-214ENST00000564096 PLEKHG2Q9H7P9 1386 aa16.92■□□□□ 0.3
CLK3-214ENST00000564096 NUTM2BA6NNL0 878 aaPredicted RBP16.92■□□□□ 0.3
CLK3-214ENST00000564096 NUTM2EB1AL46 878 aaPredicted RBP16.92■□□□□ 0.3
CLK3-214ENST00000564096 NUTM2AQ8IVF1 878 aaPredicted RBP16.92■□□□□ 0.3
CLK3-214ENST00000564096 AXIN2Q9Y2T1 843 aa16.92■□□□□ 0.3
CLK3-214ENST00000564096 WDR17Q8IZU2 1322 aa16.92■□□□□ 0.3
CLK3-214ENST00000564096 ADAMTS2O95450 1211 aa16.91■□□□□ 0.3
CLK3-214ENST00000564096 PLCH1Q4KWH8 1693 aa16.91■□□□□ 0.3
CLK3-214ENST00000564096 CENPBP07199 599 aaPredicted RBP16.9■□□□□ 0.3
CLK3-214ENST00000564096 NLRP2Q9NX02 1062 aa16.9■□□□□ 0.3
CLK3-214ENST00000564096 FAM83GA6ND36 823 aa16.89■□□□□ 0.29
CLK3-214ENST00000564096 EVA1CP58658 441 aa16.89■□□□□ 0.29
CLK3-214ENST00000564096 AEBP1Q8IUX7 1158 aa16.89■□□□□ 0.29
CLK3-214ENST00000564096 PLEKHF1Q96S99 279 aa16.89■□□□□ 0.29
CLK3-214ENST00000564096 NWD2Q9ULI1 1742 aa16.88■□□□□ 0.29
CLK3-214ENST00000564096 APAF1O14727 1248 aa16.88■□□□□ 0.29
CLK3-214ENST00000564096 NCBP3Q53F19 620 aaKnown RBP16.88■□□□□ 0.29
CLK3-214ENST00000564096 NBPF6Q5VWK0 638 aa16.88■□□□□ 0.29
CLK3-214ENST00000564096 TOM1L2Q6ZVM7 507 aa16.88■□□□□ 0.29
CLK3-214ENST00000564096 TCP11L2Q8N4U5 519 aa16.88■□□□□ 0.29
CLK3-214ENST00000564096 NBPF4Q96M43 638 aa16.88■□□□□ 0.29
CLK3-214ENST00000564096 BTG4Q9NY30 223 aa16.88■□□□□ 0.29
CLK3-214ENST00000564096 LRP6O75581 1613 aa16.88■□□□□ 0.29
CLK3-214ENST00000564096 CRB1P82279 1406 aa16.87■□□□□ 0.29
CLK3-214ENST00000564096 RGPD5Q99666 1765 aa16.87■□□□□ 0.29
CLK3-214ENST00000564096 LMOD3Q0VAK6 560 aa16.87■□□□□ 0.29
CLK3-214ENST00000564096 MEX3CQ5U5Q3 659 aaKnown RBP16.87■□□□□ 0.29
CLK3-214ENST00000564096 STRN4Q9NRL3 753 aa16.87■□□□□ 0.29
CLK3-214ENST00000564096 SLIT2O94813 1529 aa16.86■□□□□ 0.29
CLK3-214ENST00000564096 USHBP1Q8N6Y0 703 aa16.86■□□□□ 0.29
CLK3-214ENST00000564096 GAS2L2Q8NHY3 880 aa16.86■□□□□ 0.29
CLK3-214ENST00000564096 NRAPQ86VF7 1730 aa16.85■□□□□ 0.29
CLK3-214ENST00000564096 RAPGEF4Q8WZA2 1011 aa16.85■□□□□ 0.29
CLK3-214ENST00000564096 NFE2L2Q16236 605 aa16.84■□□□□ 0.29
CLK3-214ENST00000564096 C8orf37Q96NL8 207 aa16.84■□□□□ 0.29
CLK3-214ENST00000564096 CARD10Q9BWT7 1032 aa16.84■□□□□ 0.29
CLK3-214ENST00000564096 TMPOP42166 694 aaKnown RBP16.83■□□□□ 0.28
CLK3-214ENST00000564096 CCDC27Q2M243 656 aa16.83■□□□□ 0.28
CLK3-214ENST00000564096 AMOTQ4VCS5 1084 aa16.83■□□□□ 0.28
CLK3-214ENST00000564096 PARP4Q9UKK3 1724 aaKnown RBP16.83■□□□□ 0.28
CLK3-214ENST00000564096 TATP17735 454 aaPredicted RBP16.82■□□□□ 0.28
CLK3-214ENST00000564096 PDE3BQ13370 1112 aa16.82■□□□□ 0.28
CLK3-214ENST00000564096 LARP1Q6PKG0 1096 aaKnown RBP16.82■□□□□ 0.28
CLK3-214ENST00000564096 NGLY1Q96IV0 654 aa16.82■□□□□ 0.28
CLK3-214ENST00000564096 SALL2Q9Y467 1007 aaPredicted RBP16.82■□□□□ 0.28
CLK3-214ENST00000564096 RGPD2P0DJD1 1756 aa16.82■□□□□ 0.28
CLK3-214ENST00000564096 RIPK4P57078 832 aa16.81■□□□□ 0.28
CLK3-214ENST00000564096 CALD1Q05682 793 aaKnown RBP16.81■□□□□ 0.28
CLK3-214ENST00000564096 NEUROD2Q15784 382 aa16.81■□□□□ 0.28
CLK3-214ENST00000564096 PLEKHO1Q53GL0 409 aaPredicted RBP16.81■□□□□ 0.28
CLK3-214ENST00000564096 PHACTR3Q96KR7 559 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms