RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 LARP1BQ659C4 914 aaKnown RBP12.12□□□□□ -0.47
GTF3C1-202ENST00000561623 GNAI3P08754 354 aa12.12□□□□□ -0.47
GTF3C1-202ENST00000561623 FILIP1LQ4L180 1135 aa12.12□□□□□ -0.47
GTF3C1-202ENST00000561623 AMOTL1Q8IY63 956 aa12.12□□□□□ -0.47
GTF3C1-202ENST00000561623 MTMR7Q9Y216 660 aa12.12□□□□□ -0.47
GTF3C1-202ENST00000561623 AEBP1Q8IUX7 1158 aa12.11□□□□□ -0.47
GTF3C1-202ENST00000561623 NUP62CLQ9H1M0 184 aa12.11□□□□□ -0.47
GTF3C1-202ENST00000561623 ADAMTS2O95450 1211 aa12.11□□□□□ -0.47
GTF3C1-202ENST00000561623 TBC1D2Q9BYX2 928 aa12.11□□□□□ -0.47
GTF3C1-202ENST00000561623 SSFA2P28290 1259 aa12.11□□□□□ -0.47
GTF3C1-202ENST00000561623 EPS15P42566 896 aa12.11□□□□□ -0.47
GTF3C1-202ENST00000561623 CGNQ9P2M7 1197 aaKnown RBP12.11□□□□□ -0.47
GTF3C1-202ENST00000561623 GNAI2P04899 355 aa12.11□□□□□ -0.47
GTF3C1-202ENST00000561623 CT47A1Q5JQC4 288 aaPredicted RBP12.11□□□□□ -0.47
GTF3C1-202ENST00000561623 SPATA32Q96LK8 384 aa12.11□□□□□ -0.47
GTF3C1-202ENST00000561623 KIAA0754O94854 1291 aa12.11□□□□□ -0.47
GTF3C1-202ENST00000561623 NCOA2Q15596 1464 aa12.11□□□□□ -0.47
GTF3C1-202ENST00000561623 HSP90AB2PQ58FF8 381 aa12.1□□□□□ -0.47
GTF3C1-202ENST00000561623 CADPSQ9ULU8 1353 aa12.1□□□□□ -0.47
GTF3C1-202ENST00000561623 PAF1Q8N7H5 531 aa12.1□□□□□ -0.47
GTF3C1-202ENST00000561623 TNPO1Q92973 898 aaKnown RBP12.1□□□□□ -0.47
GTF3C1-202ENST00000561623 CCDC102AQ96A19 550 aa12.1□□□□□ -0.47
GTF3C1-202ENST00000561623 ANKRD50Q9ULJ7 1429 aa12.1□□□□□ -0.47
GTF3C1-202ENST00000561623 NGLY1Q96IV0 654 aa12.1□□□□□ -0.47
GTF3C1-202ENST00000561623 LRRCC1Q9C099 1032 aa12.1□□□□□ -0.47
GTF3C1-202ENST00000561623 SLC4A2P04920 1241 aa12.09□□□□□ -0.47
GTF3C1-202ENST00000561623 TMEM87AQ8NBN3 555 aa12.09□□□□□ -0.47
GTF3C1-202ENST00000561623 BRMS1Q9HCU9 246 aa12.09□□□□□ -0.47
GTF3C1-202ENST00000561623 CFAP70Q5T0N1 1121 aa12.09□□□□□ -0.47
GTF3C1-202ENST00000561623 PPFIBP1Q86W92 1011 aa12.09□□□□□ -0.47
GTF3C1-202ENST00000561623 PTPRGP23470 1445 aa12.09□□□□□ -0.47
GTF3C1-202ENST00000561623 ERLIN1O75477 346 aa12.09□□□□□ -0.47
GTF3C1-202ENST00000561623 EIF3JO75822 258 aaKnown RBP12.09□□□□□ -0.47
GTF3C1-202ENST00000561623 FANCD2Q9BXW9 1451 aa12.08□□□□□ -0.47
GTF3C1-202ENST00000561623 TAF3Q5VWG9 929 aa12.08□□□□□ -0.48
GTF3C1-202ENST00000561623 CENPHQ9H3R5 247 aa12.08□□□□□ -0.48
GTF3C1-202ENST00000561623 SLFN5Q08AF3 891 aa12.08□□□□□ -0.48
GTF3C1-202ENST00000561623 CCDC30Q5VVM6 783 aa12.08□□□□□ -0.48
GTF3C1-202ENST00000561623 MAP3K9P80192 1104 aa12.08□□□□□ -0.48
GTF3C1-202ENST00000561623 PPP4R3BQ5MIZ7 849 aa12.08□□□□□ -0.48
GTF3C1-202ENST00000561623 NLRP2Q9NX02 1062 aa12.08□□□□□ -0.48
GTF3C1-202ENST00000561623 PDRG1Q9NUG6 133 aa12.08□□□□□ -0.48
GTF3C1-202ENST00000561623 MAGEC2Q9UBF1 373 aaPredicted RBP12.08□□□□□ -0.48
GTF3C1-202ENST00000561623 TMEM57Q8N5G2 664 aa12.07□□□□□ -0.48
GTF3C1-202ENST00000561623 UBXN4Q92575 508 aa12.07□□□□□ -0.48
GTF3C1-202ENST00000561623 JAKMIP1Q96N16 626 aaKnown RBP12.07□□□□□ -0.48
GTF3C1-202ENST00000561623 CLEC11AQ9Y240 323 aa12.07□□□□□ -0.48
GTF3C1-202ENST00000561623 WDR63Q8IWG1 891 aa12.07□□□□□ -0.48
GTF3C1-202ENST00000561623 USP25Q9UHP3 1055 aa12.07□□□□□ -0.48
GTF3C1-202ENST00000561623 ARAP1Q96P48 1450 aa12.07□□□□□ -0.48
GTF3C1-202ENST00000561623 IGF1RP08069 1367 aa12.07□□□□□ -0.48
GTF3C1-202ENST00000561623 XBP1P17861 261 aa12.07□□□□□ -0.48
GTF3C1-202ENST00000561623 MAP3K11Q16584 847 aa12.07□□□□□ -0.48
GTF3C1-202ENST00000561623 ZFYVE27Q5T4F4 411 aa12.07□□□□□ -0.48
GTF3C1-202ENST00000561623 CWC27Q6UX04 472 aaKnown RBP12.07□□□□□ -0.48
GTF3C1-202ENST00000561623 UPF3BQ9BZI7 483 aaKnown RBP12.07□□□□□ -0.48
GTF3C1-202ENST00000561623 HIP1O00291 1037 aa12.06□□□□□ -0.48
GTF3C1-202ENST00000561623 TMCO3Q6UWJ1 677 aa12.06□□□□□ -0.48
GTF3C1-202ENST00000561623 FERMT3Q86UX7 667 aa12.06□□□□□ -0.48
GTF3C1-202ENST00000561623 SLC12A5Q9H2X9 1139 aa12.06□□□□□ -0.48
GTF3C1-202ENST00000561623 DEF6Q9H4E7 631 aa12.06□□□□□ -0.48
GTF3C1-202ENST00000561623 CEP57L1Q8IYX8 460 aa12.06□□□□□ -0.48
GTF3C1-202ENST00000561623 SIL1Q9H173 461 aa12.06□□□□□ -0.48
GTF3C1-202ENST00000561623 POLR3GO15318 223 aaPredicted RBP12.06□□□□□ -0.48
GTF3C1-202ENST00000561623 PTPN14Q15678 1187 aa12.06□□□□□ -0.48
GTF3C1-202ENST00000561623 CCDC181Q5TID7 509 aa12.05□□□□□ -0.48
GTF3C1-202ENST00000561623 BEGAINQ9BUH8 593 aa12.05□□□□□ -0.48
GTF3C1-202ENST00000561623 GOLGA6L10A6NI86 522 aa12.05□□□□□ -0.48
GTF3C1-202ENST00000561623 ESCO1Q5FWF5 840 aa12.05□□□□□ -0.48
GTF3C1-202ENST00000561623 RBM42Q9BTD8 480 aaKnown RBP12.05□□□□□ -0.48
GTF3C1-202ENST00000561623 CBFA2T2O43439 604 aa12.05□□□□□ -0.48
GTF3C1-202ENST00000561623 ODF2Q5BJF6 829 aa12.05□□□□□ -0.48
GTF3C1-202ENST00000561623 IL1RAPL2Q9NP60 686 aa12.05□□□□□ -0.48
GTF3C1-202ENST00000561623 RBM27Q9P2N5 1060 aaKnown RBP12.05□□□□□ -0.48
GTF3C1-202ENST00000561623 IKQ13123 557 aaPredicted RBP12.05□□□□□ -0.48
GTF3C1-202ENST00000561623 ANKRD1Q15327 319 aa12.05□□□□□ -0.48
GTF3C1-202ENST00000561623 C16orf45Q96MC5 204 aaPredicted RBP12.05□□□□□ -0.48
GTF3C1-202ENST00000561623 CFTRP13569 1480 aa12.04□□□□□ -0.48
GTF3C1-202ENST00000561623 ZNHIT6Q9NWK9 470 aaKnown RBP12.04□□□□□ -0.48
GTF3C1-202ENST00000561623 FYCO1Q9BQS8 1478 aa12.04□□□□□ -0.48
GTF3C1-202ENST00000561623 SMARCA5O60264 1052 aaPredicted RBP12.04□□□□□ -0.48
GTF3C1-202ENST00000561623 CCDC43Q96MW1 224 aaKnown RBP12.04□□□□□ -0.48
GTF3C1-202ENST00000561623 MYO6Q9UM54 1294 aa12.04□□□□□ -0.48
GTF3C1-202ENST00000561623 CASTP20810 708 aaKnown RBP12.04□□□□□ -0.48
GTF3C1-202ENST00000561623 RBM5P52756 815 aaKnown RBP eCLIP12.04□□□□□ -0.48
GTF3C1-202ENST00000561623 CCDC183Q5T5S1 534 aa12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 DDX11Q96FC9 970 aa12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 TMEM132AQ24JP5 1023 aa12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 CCDC83Q8IWF9 413 aa12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 JMYQ8N9B5 988 aa12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 PANK2Q9BZ23 570 aa12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 TMX1Q9H3N1 280 aa12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 TRMT1Q9NXH9 659 aaKnown RBP12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 SMARCA4P51532 1647 aa12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 TNNT1P13805 278 aa12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 CHMP4BP1P59074 171 aa12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 BLOC1S2Q6QNY1 142 aa12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 GDPD2Q9HCC8 539 aa12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 DHX8Q14562 1220 aaKnown RBP12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 LRRFIP2Q9Y608 721 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms