RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 GJD4Q96KN9 370 aaPredicted RBP19.63■□□□□ 0.73
USP3-221ENST00000561442 LARP1Q6PKG0 1096 aaKnown RBP19.62■□□□□ 0.73
USP3-221ENST00000561442 NWD2Q9ULI1 1742 aa19.62■□□□□ 0.73
USP3-221ENST00000561442 LMO7Q8WWI1 1683 aa19.62■□□□□ 0.73
USP3-221ENST00000561442 COL5A2P05997 1499 aaPredicted RBP19.61■□□□□ 0.73
USP3-221ENST00000561442 CC2D1BQ5T0F9 858 aaKnown RBP19.61■□□□□ 0.73
USP3-221ENST00000561442 NRAPQ86VF7 1730 aa19.61■□□□□ 0.73
USP3-221ENST00000561442 NSD2O96028 1365 aa19.6■□□□□ 0.73
USP3-221ENST00000561442 AMPHP49418 695 aa19.6■□□□□ 0.73
USP3-221ENST00000561442 MORC1Q86VD1 984 aa19.6■□□□□ 0.73
USP3-221ENST00000561442 CSB-PGBD3P0DP91 1061 aa19.59■□□□□ 0.73
USP3-221ENST00000561442 USP35Q9P2H5 1018 aa19.59■□□□□ 0.73
USP3-221ENST00000561442 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.59■□□□□ 0.73
USP3-221ENST00000561442 SPATA31A5Q5VU36 1347 aa19.58■□□□□ 0.73
USP3-221ENST00000561442 SPATA31A7Q8IWB4 1347 aa19.58■□□□□ 0.73
USP3-221ENST00000561442 IP6K1Q92551 441 aa19.58■□□□□ 0.72
USP3-221ENST00000561442 EMILIN1Q9Y6C2 1016 aa19.58■□□□□ 0.72
USP3-221ENST00000561442 PPM1GO15355 546 aaPredicted RBP19.57■□□□□ 0.72
USP3-221ENST00000561442 HOXC9P31274 260 aa19.57■□□□□ 0.72
USP3-221ENST00000561442 DDX10Q13206 875 aaKnown RBP19.57■□□□□ 0.72
USP3-221ENST00000561442 LTV1Q96GA3 475 aaPredicted RBP19.57■□□□□ 0.72
USP3-221ENST00000561442 COL18A1P39060 1754 aa19.57■□□□□ 0.72
USP3-221ENST00000561442 GLI3P10071 1580 aa19.57■□□□□ 0.72
USP3-221ENST00000561442 SPATA31A1Q5TZJ5 1347 aa19.56■□□□□ 0.72
USP3-221ENST00000561442 FAM98CQ17RN3 349 aaKnown RBP19.56■□□□□ 0.72
USP3-221ENST00000561442 TOM1L2Q6ZVM7 507 aa19.56■□□□□ 0.72
USP3-221ENST00000561442 ANKRD24Q8TF21 1146 aa19.56■□□□□ 0.72
USP3-221ENST00000561442 RGS12O14924 1447 aa19.56■□□□□ 0.72
USP3-221ENST00000561442 WDR17Q8IZU2 1322 aa19.55■□□□□ 0.72
USP3-221ENST00000561442 ABCC6O95255 1503 aa19.55■□□□□ 0.72
USP3-221ENST00000561442 A0A0G2JS52 829 aa19.54■□□□□ 0.72
USP3-221ENST00000561442 MYT1Q01538 1121 aa19.54■□□□□ 0.72
USP3-221ENST00000561442 POLKQ9UBT6 870 aa19.54■□□□□ 0.72
USP3-221ENST00000561442 RTL1A6NKG5 1358 aa19.54■□□□□ 0.72
USP3-221ENST00000561442 ERBB3P21860 1342 aa19.53■□□□□ 0.72
USP3-221ENST00000561442 BLMP54132 1417 aaPredicted RBP19.53■□□□□ 0.72
USP3-221ENST00000561442 LTN1O94822 1766 aa19.53■□□□□ 0.72
USP3-221ENST00000561442 HSP90AB2PQ58FF8 381 aa19.53■□□□□ 0.72
USP3-221ENST00000561442 CRB1P82279 1406 aa19.52■□□□□ 0.72
USP3-221ENST00000561442 ZNF316A6NFI3 1004 aaPredicted RBP19.52■□□□□ 0.72
USP3-221ENST00000561442 TCP11L2Q8N4U5 519 aa19.52■□□□□ 0.72
USP3-221ENST00000561442 NLRP2Q9NX02 1062 aa19.52■□□□□ 0.72
USP3-221ENST00000561442 FLT4P35916 1363 aa19.52■□□□□ 0.72
USP3-221ENST00000561442 CDK12Q9NYV4 1490 aaPredicted RBP19.52■□□□□ 0.72
USP3-221ENST00000561442 SEPT12Q8IYM1 358 aa19.51■□□□□ 0.71
USP3-221ENST00000561442 NPC1L1Q9UHC9 1359 aa19.51■□□□□ 0.71
USP3-221ENST00000561442 ANKRD26Q9UPS8 1709 aa19.51■□□□□ 0.71
USP3-221ENST00000561442 PEAK1Q9H792 1746 aa19.49■□□□□ 0.71
USP3-221ENST00000561442 CARD10Q9BWT7 1032 aa19.49■□□□□ 0.71
USP3-221ENST00000561442 INSRP06213 1382 aa19.48■□□□□ 0.71
USP3-221ENST00000561442 KIF24Q5T7B8 1368 aa19.48■□□□□ 0.71
USP3-221ENST00000561442 ONECUT3O60422 494 aaPredicted RBP19.48■□□□□ 0.71
USP3-221ENST00000561442 RGPD5Q99666 1765 aa19.47■□□□□ 0.71
USP3-221ENST00000561442 BARGINQ6ZT62 677 aa19.47■□□□□ 0.71
USP3-221ENST00000561442 SMG6Q86US8 1419 aaKnown RBP19.46■□□□□ 0.71
USP3-221ENST00000561442 THRAP3Q9Y2W1 955 aaKnown RBP19.46■□□□□ 0.71
USP3-221ENST00000561442 USHBP1Q8N6Y0 703 aa19.45■□□□□ 0.7
USP3-221ENST00000561442 MTHFSP49914 203 aa19.44■□□□□ 0.7
USP3-221ENST00000561442 NBPF6Q5VWK0 638 aa19.44■□□□□ 0.7
USP3-221ENST00000561442 NBPF4Q96M43 638 aa19.44■□□□□ 0.7
USP3-221ENST00000561442 EIF4A2Q14240 407 aaKnown RBP19.42■□□□□ 0.7
USP3-221ENST00000561442 KRT27Q7Z3Y8 459 aa19.42■□□□□ 0.7
USP3-221ENST00000561442 THSD7AQ9UPZ6 1657 aa19.4■□□□□ 0.7
USP3-221ENST00000561442 FAM182BQ5T319 152 aa19.39■□□□□ 0.69
USP3-221ENST00000561442 DISP2A7MBM2 1401 aa19.39■□□□□ 0.69
USP3-221ENST00000561442 MAP2P11137 1827 aaKnown RBP19.39■□□□□ 0.69
USP3-221ENST00000561442 IL2RBP14784 551 aa19.38■□□□□ 0.69
USP3-221ENST00000561442 PPP2R1AP30153 589 aa19.38■□□□□ 0.69
USP3-221ENST00000561442 PDE3BQ13370 1112 aa19.38■□□□□ 0.69
USP3-221ENST00000561442 DDB1Q16531 1140 aa19.38■□□□□ 0.69
USP3-221ENST00000561442 EYA1Q99502 592 aa19.38■□□□□ 0.69
USP3-221ENST00000561442 CDCA7Q9BWT1 371 aaPredicted RBP19.38■□□□□ 0.69
USP3-221ENST00000561442 SOCS7O14512 581 aa19.37■□□□□ 0.69
USP3-221ENST00000561442 EP400Q96L91 3159 aa19.37■□□□□ 0.69
USP3-221ENST00000561442 PARD3Q8TEW0 1356 aa19.36■□□□□ 0.69
USP3-221ENST00000561442 FAM208AQ9UK61 1670 aaKnown RBP19.35■□□□□ 0.69
USP3-221ENST00000561442 EXOC5O00471 708 aa19.34■□□□□ 0.69
USP3-221ENST00000561442 IL13P35225 146 aa19.34■□□□□ 0.69
USP3-221ENST00000561442 RAPGEF4Q8WZA2 1011 aa19.34■□□□□ 0.69
USP3-221ENST00000561442 MEGF6O75095 1541 aa19.34■□□□□ 0.69
USP3-221ENST00000561442 BRWD3Q6RI45 1802 aa19.32■□□□□ 0.68
USP3-221ENST00000561442 RGPD2P0DJD1 1756 aa19.32■□□□□ 0.68
USP3-221ENST00000561442 DIAPH1O60610 1272 aaKnown RBP19.32■□□□□ 0.68
USP3-221ENST00000561442 RALBP1Q15311 655 aa19.32■□□□□ 0.68
USP3-221ENST00000561442 TNS2Q63HR2 1409 aa19.32■□□□□ 0.68
USP3-221ENST00000561442 LRRC37A3O60309 1634 aa19.32■□□□□ 0.68
USP3-221ENST00000561442 IGSF1Q8N6C5 1336 aa19.31■□□□□ 0.68
USP3-221ENST00000561442 TATP17735 454 aaPredicted RBP19.31■□□□□ 0.68
USP3-221ENST00000561442 AEBP1Q8IUX7 1158 aa19.31■□□□□ 0.68
USP3-221ENST00000561442 MARCH10Q8NA82 808 aaPredicted RBP19.31■□□□□ 0.68
USP3-221ENST00000561442 CFAP53Q96M91 514 aa19.31■□□□□ 0.68
USP3-221ENST00000561442 PARP4Q9UKK3 1724 aaKnown RBP19.31■□□□□ 0.68
USP3-221ENST00000561442 COL3A1P02461 1466 aaPredicted RBP19.3■□□□□ 0.68
USP3-221ENST00000561442 UPF1Q92900 1129 aaKnown RBP eCLIP19.3■□□□□ 0.68
USP3-221ENST00000561442 NCAPD2Q15021 1401 aa19.3■□□□□ 0.68
USP3-221ENST00000561442 WNK3Q9BYP7 1800 aa19.3■□□□□ 0.68
USP3-221ENST00000561442 OVOS2A0A0G2JMS6 1433 aa19.29■□□□□ 0.68
USP3-221ENST00000561442 SULT6B1Q6IMI4 303 aa19.29■□□□□ 0.68
USP3-221ENST00000561442 DDX54Q8TDD1 881 aaKnown RBP19.29■□□□□ 0.68
USP3-221ENST00000561442 U2SURPO15042 1029 aaKnown RBP19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms