RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, human

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-222	ENST00000561431	LINC00528	Q8N1L1	170 aa		7.6	□□□□□ -1.19
LRRC28-222	ENST00000561431	MEIOB	Q8N635	442 aa		7.6	□□□□□ -1.19
LRRC28-222	ENST00000561431	CNTNAP3B	Q96NU0	1288 aa		7.6	□□□□□ -1.19
LRRC28-222	ENST00000561431	CNTNAP3	Q9BZ76	1288 aa		7.6	□□□□□ -1.19
LRRC28-222	ENST00000561431	ZMYND15	Q9H091	742 aa		7.6	□□□□□ -1.19
LRRC28-222	ENST00000561431	SUPT5H	O00267	1087 aa	Known RBP	7.59	□□□□□ -1.19
LRRC28-222	ENST00000561431	GRM5	P41594	1212 aa		7.59	□□□□□ -1.19
LRRC28-222	ENST00000561431	MTMR2	Q13614	643 aa		7.59	□□□□□ -1.19
LRRC28-222	ENST00000561431	TUSC1	Q2TAM9	212 aa		7.59	□□□□□ -1.19
LRRC28-222	ENST00000561431	CABLES1	Q8TDN4	633 aa		7.59	□□□□□ -1.19
LRRC28-222	ENST00000561431	SPDYE5	A6NIY4	337 aa		7.58	□□□□□ -1.2
LRRC28-222	ENST00000561431	RAD21	O60216	631 aa		7.58	□□□□□ -1.2
LRRC28-222	ENST00000561431	UPP2	O95045	317 aa		7.58	□□□□□ -1.2
LRRC28-222	ENST00000561431	C4orf48	Q5BLP8	95 aa		7.58	□□□□□ -1.2
LRRC28-222	ENST00000561431	PRPF38B	Q5VTL8	546 aa	Known RBP	7.58	□□□□□ -1.2
LRRC28-222	ENST00000561431	LILRB3	O75022	631 aa		7.57	□□□□□ -1.2
LRRC28-222	ENST00000561431	HRC	P23327	699 aa		7.57	□□□□□ -1.2
LRRC28-222	ENST00000561431	CTH	P32929	405 aa		7.57	□□□□□ -1.2
LRRC28-222	ENST00000561431	RTL5	Q5HYW3	569 aa	Predicted RBP	7.57	□□□□□ -1.2
LRRC28-222	ENST00000561431	ZNF385C	Q66K41	422 aa	Predicted RBP	7.57	□□□□□ -1.2
LRRC28-222	ENST00000561431	PPP2R2D	Q66LE6	453 aa		7.57	□□□□□ -1.2
LRRC28-222	ENST00000561431	LYPD8	Q6UX82	237 aa		7.57	□□□□□ -1.2
LRRC28-222	ENST00000561431	MCM6	Q14566	821 aa		7.56	□□□□□ -1.2
LRRC28-222	ENST00000561431	BANK1	Q8NDB2	785 aa		7.56	□□□□□ -1.2
LRRC28-222	ENST00000561431	COL25A1	Q9BXS0	654 aa	Predicted RBP	7.56	□□□□□ -1.2
LRRC28-222	ENST00000561431	MAP10	Q9P2G4	905 aa		7.56	□□□□□ -1.2
LRRC28-222	ENST00000561431	APBB1	O00213	710 aa		7.55	□□□□□ -1.2
LRRC28-222	ENST00000561431	F12	P00748	615 aa	Predicted RBP	7.55	□□□□□ -1.2
LRRC28-222	ENST00000561431	RNFT1	Q5M7Z0	435 aa		7.55	□□□□□ -1.2
LRRC28-222	ENST00000561431	GPAT2	Q6NUI2	795 aa		7.55	□□□□□ -1.2
LRRC28-222	ENST00000561431	HELB	Q8NG08	1087 aa	Predicted RBP	7.55	□□□□□ -1.2
LRRC28-222	ENST00000561431	PRM3	Q9NNZ6	103 aa		7.55	□□□□□ -1.2
LRRC28-222	ENST00000561431	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	7.55	□□□□□ -1.2
LRRC28-222	ENST00000561431	PTS	Q03393	145 aa		7.54	□□□□□ -1.2
LRRC28-222	ENST00000561431	SVOP	Q8N4V2	548 aa		7.54	□□□□□ -1.2
LRRC28-222	ENST00000561431	SNRK	Q9NRH2	765 aa		7.54	□□□□□ -1.2
LRRC28-222	ENST00000561431	CFAP99	D6REC4	459 aa		7.53	□□□□□ -1.2
LRRC28-222	ENST00000561431	IRS1	P35568	1242 aa		7.53	□□□□□ -1.2
LRRC28-222	ENST00000561431	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	7.53	□□□□□ -1.2
LRRC28-222	ENST00000561431	FBXO31	Q5XUX0	539 aa	Predicted RBP	7.53	□□□□□ -1.2
LRRC28-222	ENST00000561431	WHAMM	Q8TF30	809 aa		7.53	□□□□□ -1.2
LRRC28-222	ENST00000561431	NANOS1	Q8WY41	292 aa	Known RBP	7.53	□□□□□ -1.2
LRRC28-222	ENST00000561431	CLUAP1	Q96AJ1	413 aa		7.53	□□□□□ -1.2
LRRC28-222	ENST00000561431	TSEN34	Q9BSV6	310 aa	Known RBP	7.53	□□□□□ -1.2
LRRC28-222	ENST00000561431	IGHA1	P01876	353 aa		7.52	□□□□□ -1.21
LRRC28-222	ENST00000561431	AGER	Q15109	404 aa		7.52	□□□□□ -1.21
LRRC28-222	ENST00000561431	ABCC9	O60706	1549 aa		7.52	□□□□□ -1.21
LRRC28-222	ENST00000561431	TTLL8	A6PVC2	850 aa		7.51	□□□□□ -1.21
LRRC28-222	ENST00000561431	ARHGEF15	O94989	841 aa		7.51	□□□□□ -1.21
LRRC28-222	ENST00000561431	USP17L8	P0C7I0	530 aa		7.51	□□□□□ -1.21
LRRC28-222	ENST00000561431	SLURP2	P0DP57	97 aa		7.51	□□□□□ -1.21
LRRC28-222	ENST00000561431	BPHL	Q86WA6	291 aa	Predicted RBP	7.51	□□□□□ -1.21
LRRC28-222	ENST00000561431	WWC1	Q8IX03	1113 aa		7.51	□□□□□ -1.21
LRRC28-222	ENST00000561431	FSHR	P23945	695 aa		7.5	□□□□□ -1.21
LRRC28-222	ENST00000561431	C1QTNF2	Q9BXJ5	285 aa		7.5	□□□□□ -1.21
LRRC28-222	ENST00000561431	CTDSPL2	Q05D32	466 aa		7.49	□□□□□ -1.21
LRRC28-222	ENST00000561431	CCDC155	Q8N6L0	562 aa		7.49	□□□□□ -1.21
LRRC28-222	ENST00000561431	MAP4K5	Q9Y4K4	846 aa		7.49	□□□□□ -1.21
LRRC28-222	ENST00000561431	FIGNL2	A6NMB9	653 aa		7.48	□□□□□ -1.21
LRRC28-222	ENST00000561431	KANK3	Q6NY19	840 aa		7.48	□□□□□ -1.21
LRRC28-222	ENST00000561431	SH3RF1	Q7Z6J0	888 aa		7.48	□□□□□ -1.21
LRRC28-222	ENST00000561431	POM121	Q96HA1	1249 aa		7.48	□□□□□ -1.21
LRRC28-222	ENST00000561431		A6NJR5	290 aa		7.47	□□□□□ -1.21
LRRC28-222	ENST00000561431	PER1	O15534	1290 aa	Predicted RBP	7.47	□□□□□ -1.21
LRRC28-222	ENST00000561431	ABL2	P42684	1182 aa		7.47	□□□□□ -1.21
LRRC28-222	ENST00000561431	FOXK2	Q01167	660 aa		7.47	□□□□□ -1.21
LRRC28-222	ENST00000561431	XP32	Q5T750	250 aa		7.47	□□□□□ -1.21
LRRC28-222	ENST00000561431	PROSER2	Q86WR7	435 aa	Predicted RBP	7.47	□□□□□ -1.21
LRRC28-222	ENST00000561431	MTMR14	Q8NCE2	650 aa		7.47	□□□□□ -1.21
LRRC28-222	ENST00000561431	GDPD2	Q9HCC8	539 aa		7.47	□□□□□ -1.21
LRRC28-222	ENST00000561431	EMILIN1	Q9Y6C2	1016 aa		7.47	□□□□□ -1.21
LRRC28-222	ENST00000561431	SLC35F4	A4IF30	521 aa		7.46	□□□□□ -1.22
LRRC28-222	ENST00000561431	VASH1	Q7L8A9	365 aa	Predicted RBP	7.46	□□□□□ -1.22
LRRC28-222	ENST00000561431	ITGA6	P23229	1130 aa		7.45	□□□□□ -1.22
LRRC28-222	ENST00000561431	MARS	P56192	900 aa	Known RBP	7.45	□□□□□ -1.22
LRRC28-222	ENST00000561431	TRMT44	Q8IYL2	757 aa	Known RBP	7.45	□□□□□ -1.22
LRRC28-222	ENST00000561431	CCDC116	Q8IYX3	515 aa		7.45	□□□□□ -1.22
LRRC28-222	ENST00000561431	VWA5B2	Q8N398	1253 aa		7.45	□□□□□ -1.22
LRRC28-222	ENST00000561431	LRRN4	Q8WUT4	740 aa		7.45	□□□□□ -1.22
LRRC28-222	ENST00000561431	COG6	Q9Y2V7	657 aa		7.45	□□□□□ -1.22
LRRC28-222	ENST00000561431	ARID3C	A6NKF2	412 aa		7.44	□□□□□ -1.22
LRRC28-222	ENST00000561431	SPINT1	O43278	529 aa		7.44	□□□□□ -1.22
LRRC28-222	ENST00000561431	TRAK2	O60296	914 aa		7.44	□□□□□ -1.22
LRRC28-222	ENST00000561431	CBLB	Q13191	982 aa		7.44	□□□□□ -1.22
LRRC28-222	ENST00000561431		Q6ZVU0	165 aa		7.44	□□□□□ -1.22
LRRC28-222	ENST00000561431	SH3BP5L	Q7L8J4	393 aa		7.44	□□□□□ -1.22
LRRC28-222	ENST00000561431	PNMA1	Q8ND90	353 aa		7.44	□□□□□ -1.22
LRRC28-222	ENST00000561431	ARID3A	Q99856	593 aa		7.44	□□□□□ -1.22
LRRC28-222	ENST00000561431	ZNF330	Q9Y3S2	320 aa	Predicted RBP	7.44	□□□□□ -1.22
LRRC28-222	ENST00000561431	NDUFB9	Q9Y6M9	179 aa		7.44	□□□□□ -1.22
LRRC28-222	ENST00000561431	CDC14C	A4D256	554 aa		7.43	□□□□□ -1.22
LRRC28-222	ENST00000561431	SV2A	Q7L0J3	742 aa		7.43	□□□□□ -1.22
LRRC28-222	ENST00000561431	SCARF2	Q96GP6	870 aa	Predicted RBP	7.43	□□□□□ -1.22
LRRC28-222	ENST00000561431	ZNF777	Q9ULD5	760 aa	Predicted RBP	7.43	□□□□□ -1.22
LRRC28-222	ENST00000561431	TBC1D2B	Q9UPU7	963 aa		7.43	□□□□□ -1.22
LRRC28-222	ENST00000561431	HMX1	Q9NP08	348 aa	Predicted RBP	7.42	□□□□□ -1.22
LRRC28-222	ENST00000561431	MAGEB6P1	A0A0J9YX57	407 aa		7.41	□□□□□ -1.22
LRRC28-222	ENST00000561431	ADAMTS2	O95450	1211 aa		7.41	□□□□□ -1.22
LRRC28-222	ENST00000561431	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	7.41	□□□□□ -1.22
LRRC28-222	ENST00000561431	LYPD4	Q6UWN0	246 aa		7.41	□□□□□ -1.22

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